Gene annotation
Transcriptome id Sobic.006G106700.1
Synonym Sb06g018960
Functional annotation transmembrane amino acid transporter protein, putative, expressed
UniProt C5Y9U5 , C6JS24
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF280
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology K15015; SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15240 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os04g38680.1 : transmembrane amino acid transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a011120
Brachypodium KQJ82975
Barley HORVU2Hr1G080430.11 , HORVU2Hr1G080430.10 , HORVU2Hr1G080430.12 , HORVU2Hr1G080350.4 , HORVU2Hr1G080350.5 , HORVU2Hr1G080350.6 , HORVU2Hr1G080350.1 , HORVU2Hr1G080350.2 , HORVU2Hr1G080350.3 , HORVU2Hr1G080420.1 , HORVU3Hr1G086810.1 , HORVU2Hr1G080390.1 , HORVU2Hr1G080390.2 , HORVU2Hr1G080390.3 , HORVU2Hr1G080390.4 , HORVU2Hr1G080430.9 , HORVU2Hr1G080430.8 , HORVU2Hr1G080430.3 , HORVU2Hr1G080430.2 , HORVU2Hr1G080430.5 , HORVU2Hr1G080430.4 , HORVU2Hr1G080430.7 , HORVU2Hr1G080430.6
Wheat TraesCS2B02G343300 , TraesCS2B02G342900 , TraesCS1B02G058900 , TraesCS2A02G338600 , TraesCS2A02G339100 , TraesCS2A02G338800 , TraesCS2D02G324300 , TraesCS2D02G324400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G106700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G197700 cytochrome P450, putative, expressed -
2 Sobic.004G267300 bg55, putative, expressed -
3 Sobic.003G121900 - -
4 Sobic.001G278600 - -
5 Sobic.006G167900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
6 Sobic.006G181400 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed -
7 Sobic.005G051300 - -
8 Sobic.007G080900 MBTB23 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
9 Sobic.002G281700 eukaryotic aspartyl protease domain containing protein, expressed -
10 Sobic.003G351150 - -
11 Sobic.003G285400 heat shock protein DnaJ, putative, expressed -
12 Sobic.005G115900 OsFBO4 - F-box and other domain containing protein, expressed -
13 Sobic.010G229000 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
14 Sobic.003G311200 - -
15 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
16 Sobic.010G097100 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
17 Sobic.004G132150 - -
18 Sobic.003G266700 expressed protein -
19 Sobic.004G230400 expressed protein -
20 Sobic.006G208100 maintain optimal Na+/K+ (PubmedID : 24325391)@Up-reguralion under drought(PubMedID : 24916767)@OsHKT1@4 - Na+ transporter, expressed -


Gene co-expression network
sample Sobic006G106700 Sobic006G106700 Sobic010G197700 Sobic010G197700 Sobic006G106700--Sobic010G197700 Sobic004G267300 Sobic004G267300 Sobic006G106700--Sobic004G267300 Sobic003G121900 Sobic003G121900 Sobic006G106700--Sobic003G121900 Sobic001G278600 Sobic001G278600 Sobic006G106700--Sobic001G278600 Sobic006G167900 Sobic006G167900 Sobic006G106700--Sobic006G167900 Sobic006G181400 Sobic006G181400 Sobic006G106700--Sobic006G181400 Sobic005G051300 Sobic005G051300 Sobic006G106700--Sobic005G051300 Sobic007G080900 Sobic007G080900 Sobic006G106700--Sobic007G080900 Sobic002G281700 Sobic002G281700 Sobic006G106700--Sobic002G281700 Sobic010G197700--Sobic001G278600 Sobic008G065400 Sobic008G065400 Sobic010G197700--Sobic008G065400 Sobic008G052500 Sobic008G052500 Sobic010G197700--Sobic008G052500 Sobic010G054500 Sobic010G054500 Sobic010G197700--Sobic010G054500 Sobic001G140200 Sobic001G140200 Sobic010G197700--Sobic001G140200 Sobic003G374500 Sobic003G374500 Sobic010G197700--Sobic003G374500 Sobic007G064250 Sobic007G064250 Sobic010G197700--Sobic007G064250 Sobic003G266700 Sobic003G266700 Sobic010G197700--Sobic003G266700 Sobic008G065800 Sobic008G065800 Sobic010G197700--Sobic008G065800 Sobic009G137800 Sobic009G137800 Sobic004G267300--Sobic009G137800 Sobic007G134600 Sobic007G134600 Sobic004G267300--Sobic007G134600 Sobic008G025900 Sobic008G025900 Sobic004G267300--Sobic008G025900 Sobic003G056100 Sobic003G056100 Sobic004G267300--Sobic003G056100 Sobic001G351700 Sobic001G351700 Sobic004G267300--Sobic001G351700 Sobic009G172400 Sobic009G172400 Sobic004G267300--Sobic009G172400 Sobic002G324200 Sobic002G324200 Sobic004G267300--Sobic002G324200 Sobic010G056000 Sobic010G056000 Sobic004G267300--Sobic010G056000 Sobic004G132150 Sobic004G132150 Sobic004G267300--Sobic004G132150 Sobic005G139800 Sobic005G139800 Sobic003G121900--Sobic005G139800 Sobic007G132600 Sobic007G132600 Sobic003G121900--Sobic007G132600 Sobic008G142000 Sobic008G142000 Sobic003G121900--Sobic008G142000 Sobic001G287301 Sobic001G287301 Sobic003G121900--Sobic001G287301 Sobic006G068400 Sobic006G068400 Sobic003G121900--Sobic006G068400 Sobic003G121900--Sobic001G278600 Sobic009G209800 Sobic009G209800 Sobic003G121900--Sobic009G209800 Sobic003G121900--Sobic008G025900 Sobic001G128800 Sobic001G128800 Sobic003G121900--Sobic001G128800 Sobic001G278600--Sobic008G065400 Sobic010G101700 Sobic010G101700 Sobic001G278600--Sobic010G101700 Sobic001G278600--Sobic003G266700 Sobic001G278600--Sobic003G374500 Sobic003G366850 Sobic003G366850 Sobic001G278600--Sobic003G366850 Sobic009G159300 Sobic009G159300 Sobic001G278600--Sobic009G159300 Sobic004G121000 Sobic004G121000 Sobic001G278600--Sobic004G121000 Sobic003G351150 Sobic003G351150 Sobic001G278600--Sobic003G351150 Sobic002G171400 Sobic002G171400 Sobic001G278600--Sobic002G171400 Sobic006G167900--Sobic006G181400 Sobic006G167900--Sobic010G197700 Sobic006G167900--Sobic001G278600 Sobic006G167900--Sobic008G052500 Sobic006G167900--Sobic003G374500 Sobic006G167900--Sobic007G064250 Sobic003G137900 Sobic003G137900 Sobic006G167900--Sobic003G137900 Sobic006G167900--Sobic008G065400 Sobic006G167900--Sobic006G106700 Sobic006G181400--Sobic006G167900 Sobic006G181400--Sobic010G197700 Sobic006G181400--Sobic007G064250 Sobic006G181400--Sobic001G278600 Sobic006G181400--Sobic003G374500 Sobic006G181400--Sobic003G121900 Sobic006G181400--Sobic006G106700 Sobic006G181400--Sobic003G266700 Sobic006G181400--Sobic008G065400 SobicK010000 SobicK010000 Sobic005G051300--SobicK010000 Sobic004G200866 Sobic004G200866 Sobic005G051300--Sobic004G200866 Sobic005G051300--Sobic001G278600 Sobic005G051300--Sobic008G142000 Sobic005G051300--Sobic008G065400 Sobic005G051300--Sobic003G366850 Sobic005G051300--Sobic004G121000 Sobic009G220900 Sobic009G220900 Sobic005G051300--Sobic009G220900 Sobic005G051300--Sobic003G374500 Sobic007G081000 Sobic007G081000 Sobic007G080900--Sobic007G081000 Sobic003G422700 Sobic003G422700 Sobic007G080900--Sobic003G422700 Sobic008G094300 Sobic008G094300 Sobic007G080900--Sobic008G094300 Sobic007G080900--Sobic006G106700 Sobic007G080900--Sobic010G197700 Sobic007G080900--Sobic010G054500 Sobic010G133200 Sobic010G133200 Sobic007G080900--Sobic010G133200 Sobic003G138550 Sobic003G138550 Sobic007G080900--Sobic003G138550 Sobic007G124100 Sobic007G124100 Sobic007G080900--Sobic007G124100 Sobic001G342600 Sobic001G342600 Sobic002G281700--Sobic001G342600 Sobic006G218700 Sobic006G218700 Sobic002G281700--Sobic006G218700 Sobic008G096100 Sobic008G096100 Sobic002G281700--Sobic008G096100 Sobic006G052500 Sobic006G052500 Sobic002G281700--Sobic006G052500 Sobic009G195300 Sobic009G195300 Sobic002G281700--Sobic009G195300 Sobic007G026100 Sobic007G026100 Sobic002G281700--Sobic007G026100 Sobic003G116700 Sobic003G116700 Sobic002G281700--Sobic003G116700 Sobic003G119800 Sobic003G119800 Sobic002G281700--Sobic003G119800 Sobic001G138300 Sobic001G138300 Sobic002G281700--Sobic001G138300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.