Gene annotation
Transcriptome id Sobic.006G118300.1
Synonym VPS9B, Sb06g019940
Functional annotation vacuolar sorting protein 9 domain-containing protein, putative, expressed
UniProt C5YAE3
Pfam -
Panther DB PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09320 : Vacuolar sorting protein 9 (VPS9) domain
RAP-DB (Rice) LOC_Os04g39970.1 : vacuolar sorting protein 9 domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a011019
Brachypodium KQJ83139
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G118300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G274100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
2 Sobic.006G271700 L-asparaginase precursor protein, putative, expressed K08657: taspase, threonine aspartase, 1
3 Sobic.002G336200 nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
4 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
5 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
6 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
7 Sobic.002G425500 ATPOT1, putative, expressed -
8 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
9 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
10 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
11 Sobic.010G172000 - -
12 Sobic.006G063001 - -
13 Sobic.001G417500 expressed protein -
14 Sobic.004G155600 dnaJ domain containing protein, expressed -
15 Sobic.001G146600 - -
16 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
17 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
18 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
19 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
20 Sobic.003G297500 glucosidase 2 subunit beta precursor, putative, expressed K08288: protein kinase C substrate 80K-H


Gene co-expression network
sample Sobic006G118300 Sobic006G118300 Sobic006G274100 Sobic006G274100 Sobic006G118300--Sobic006G274100 Sobic006G271700 Sobic006G271700 Sobic006G118300--Sobic006G271700 Sobic002G336200 Sobic002G336200 Sobic006G118300--Sobic002G336200 Sobic004G119400 Sobic004G119400 Sobic006G118300--Sobic004G119400 Sobic006G270600 Sobic006G270600 Sobic006G118300--Sobic006G270600 Sobic006G269800 Sobic006G269800 Sobic006G118300--Sobic006G269800 Sobic002G425500 Sobic002G425500 Sobic006G118300--Sobic002G425500 Sobic001G155400 Sobic001G155400 Sobic006G118300--Sobic001G155400 Sobic003G120300 Sobic003G120300 Sobic006G118300--Sobic003G120300 Sobic008G101900 Sobic008G101900 Sobic006G274100--Sobic008G101900 Sobic006G140400 Sobic006G140400 Sobic006G274100--Sobic006G140400 Sobic010G032300 Sobic010G032300 Sobic006G274100--Sobic010G032300 Sobic002G380100 Sobic002G380100 Sobic006G274100--Sobic002G380100 Sobic004G354000 Sobic004G354000 Sobic006G274100--Sobic004G354000 Sobic006G274100--Sobic004G119400 Sobic004G027400 Sobic004G027400 Sobic006G274100--Sobic004G027400 Sobic003G259600 Sobic003G259600 Sobic006G274100--Sobic003G259600 Sobic009G066400 Sobic009G066400 Sobic006G274100--Sobic009G066400 Sobic009G124900 Sobic009G124900 Sobic006G271700--Sobic009G124900 Sobic004G034700 Sobic004G034700 Sobic006G271700--Sobic004G034700 Sobic006G067600 Sobic006G067600 Sobic006G271700--Sobic006G067600 Sobic001G248100 Sobic001G248100 Sobic006G271700--Sobic001G248100 Sobic001G002600 Sobic001G002600 Sobic006G271700--Sobic001G002600 Sobic009G007700 Sobic009G007700 Sobic006G271700--Sobic009G007700 Sobic001G020000 Sobic001G020000 Sobic006G271700--Sobic001G020000 Sobic004G235300 Sobic004G235300 Sobic006G271700--Sobic004G235300 Sobic007G159200 Sobic007G159200 Sobic006G271700--Sobic007G159200 Sobic008G164700 Sobic008G164700 Sobic002G336200--Sobic008G164700 Sobic008G057000 Sobic008G057000 Sobic002G336200--Sobic008G057000 Sobic002G336200--Sobic006G118300 Sobic003G207300 Sobic003G207300 Sobic002G336200--Sobic003G207300 Sobic003G217200 Sobic003G217200 Sobic002G336200--Sobic003G217200 Sobic005G108000 Sobic005G108000 Sobic002G336200--Sobic005G108000 Sobic001G245900 Sobic001G245900 Sobic002G336200--Sobic001G245900 Sobic002G060600 Sobic002G060600 Sobic002G336200--Sobic002G060600 Sobic001G542450 Sobic001G542450 Sobic002G336200--Sobic001G542450 Sobic008G017100 Sobic008G017100 Sobic004G119400--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic004G119400--Sobic010G224700 Sobic004G119400--Sobic006G269800 Sobic007G094500 Sobic007G094500 Sobic004G119400--Sobic007G094500 Sobic004G119400--Sobic002G380100 Sobic001G429600 Sobic001G429600 Sobic004G119400--Sobic001G429600 Sobic002G309200 Sobic002G309200 Sobic004G119400--Sobic002G309200 Sobic003G070100 Sobic003G070100 Sobic004G119400--Sobic003G070100 Sobic001G540800 Sobic001G540800 Sobic004G119400--Sobic001G540800 Sobic004G155600 Sobic004G155600 Sobic006G270600--Sobic004G155600 Sobic003G132000 Sobic003G132000 Sobic006G270600--Sobic003G132000 Sobic001G259000 Sobic001G259000 Sobic006G270600--Sobic001G259000 Sobic010G264000 Sobic010G264000 Sobic006G270600--Sobic010G264000 Sobic002G295500 Sobic002G295500 Sobic006G270600--Sobic002G295500 Sobic009G131900 Sobic009G131900 Sobic006G270600--Sobic009G131900 Sobic006G014100 Sobic006G014100 Sobic006G270600--Sobic006G014100 Sobic001G492200 Sobic001G492200 Sobic006G270600--Sobic001G492200 Sobic001G114500 Sobic001G114500 Sobic006G270600--Sobic001G114500 Sobic002G145800 Sobic002G145800 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic006G269800--Sobic002G425500 Sobic002G425500--Sobic001G020000 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic002G425500--Sobic004G155600 Sobic001G155400--Sobic002G425500 Sobic001G035200 Sobic001G035200 Sobic001G155400--Sobic001G035200 Sobic003G413100 Sobic003G413100 Sobic001G155400--Sobic003G413100 Sobic010G096000 Sobic010G096000 Sobic001G155400--Sobic010G096000 Sobic002G063900 Sobic002G063900 Sobic001G155400--Sobic002G063900 Sobic010G145800 Sobic010G145800 Sobic001G155400--Sobic010G145800 Sobic010G140400 Sobic010G140400 Sobic001G155400--Sobic010G140400 Sobic008G173100 Sobic008G173100 Sobic001G155400--Sobic008G173100 Sobic001G155400--Sobic001G020000 Sobic002G424900 Sobic002G424900 Sobic003G120300--Sobic002G424900 Sobic009G129100 Sobic009G129100 Sobic003G120300--Sobic009G129100 Sobic006G216100 Sobic006G216100 Sobic003G120300--Sobic006G216100 Sobic001G455600 Sobic001G455600 Sobic003G120300--Sobic001G455600 Sobic010G034100 Sobic010G034100 Sobic003G120300--Sobic010G034100 Sobic009G107300 Sobic009G107300 Sobic003G120300--Sobic009G107300 Sobic007G017800 Sobic007G017800 Sobic003G120300--Sobic007G017800 Sobic002G042800 Sobic002G042800 Sobic003G120300--Sobic002G042800 Sobic003G120300--Sobic002G425500
Octagon: transcription factors


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