Gene annotation
Transcriptome id Sobic.006G169000.1
Synonym Sb06g024460, SIR1, CNX5
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
ThiF family domain containing protein, putative, expressed
UniProt A0A1B6PMD5
Pfam PF00899
Panther DB PTHR10953 PTHR10953:SF160
NCBI CDD KOG2017; Molybdopterin synthase sulfurylase
KEGG Orthology K11996; MOCS3, adenylyltransferase and sulfurtransferase
Gene Ontology GO:0008641; ubiquitin-like modifier activating enzyme activity


Orthologs (automatic annotation)
TAIR AT5G55130 : co-factor for nitrate, reductase and xanthine dehydrogenase 5
RAP-DB (Rice) LOC_Os02g32460.1 : ThiF family domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a010326
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G042600 protein kinase domain containing protein, expressed -
2 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G297200 DUF630/DUF632 domains containing protein, putative, expressed -
4 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
5 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
6 Sobic.002G224100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
7 Sobic.003G082000 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
8 Sobic.002G219200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@plant viral response family protein, putative, expressed -
9 Sobic.001G383000 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@Ribosomal protein L16p/L10e family("PubMedID : 26759170,PubMedID : 24597475")@ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
10 Sobic.003G363200 ZOS1-17 - C2H2 zinc finger protein, expressed -
11 Sobic.002G080000 - -
12 Sobic.010G175200 low-affinity cation transporter, putative, expressed -
13 Sobic.001G470000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine acetyltransferase protein, putative, expressed K00640: serine O-acetyltransferase
14 Sobic.004G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K09843: (+)-abscisic acid 8'-hydroxylase
15 Sobic.004G195300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.010G078600 - -
17 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
18 Sobic.003G035700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
19 Sobic.003G268700 STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
20 Sobic.002G188700 armadillo/beta-catenin repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic006G169000 Sobic006G169000 Sobic004G042600 Sobic004G042600 Sobic006G169000--Sobic004G042600 Sobic010G200700 Sobic010G200700 Sobic006G169000--Sobic010G200700 Sobic004G297200 Sobic004G297200 Sobic006G169000--Sobic004G297200 Sobic006G228300 Sobic006G228300 Sobic006G169000--Sobic006G228300 Sobic003G429300 Sobic003G429300 Sobic006G169000--Sobic003G429300 Sobic002G224100 Sobic002G224100 Sobic006G169000--Sobic002G224100 Sobic003G082000 Sobic003G082000 Sobic006G169000--Sobic003G082000 Sobic002G219200 Sobic002G219200 Sobic006G169000--Sobic002G219200 Sobic001G383000 Sobic001G383000 Sobic006G169000--Sobic001G383000 Sobic004G042600--Sobic010G200700 Sobic004G042600--Sobic004G297200 Sobic002G080000 Sobic002G080000 Sobic004G042600--Sobic002G080000 Sobic010G175200 Sobic010G175200 Sobic004G042600--Sobic010G175200 Sobic004G042600--Sobic006G228300 Sobic003G363200 Sobic003G363200 Sobic004G042600--Sobic003G363200 Sobic004G042600--Sobic002G219200 Sobic006G078400 Sobic006G078400 Sobic004G042600--Sobic006G078400 Sobic004G042600--Sobic003G429300 Sobic010G200700--Sobic004G297200 Sobic006G089300 Sobic006G089300 Sobic010G200700--Sobic006G089300 Sobic003G012800 Sobic003G012800 Sobic010G200700--Sobic003G012800 Sobic010G200700--Sobic006G228300 Sobic003G373000 Sobic003G373000 Sobic010G200700--Sobic003G373000 Sobic009G066800 Sobic009G066800 Sobic010G200700--Sobic009G066800 Sobic002G036100 Sobic002G036100 Sobic010G200700--Sobic002G036100 Sobic010G245800 Sobic010G245800 Sobic010G200700--Sobic010G245800 Sobic002G131800 Sobic002G131800 Sobic010G200700--Sobic002G131800 Sobic004G297200--Sobic010G200700 Sobic004G297200--Sobic010G175200 Sobic009G247300 Sobic009G247300 Sobic004G297200--Sobic009G247300 Sobic004G297200--Sobic004G042600 Sobic003G268700 Sobic003G268700 Sobic004G297200--Sobic003G268700 Sobic004G297200--Sobic003G012800 Sobic004G297200--Sobic003G363200 Sobic004G297200--Sobic009G066800 Sobic009G044400 Sobic009G044400 Sobic004G297200--Sobic009G044400 Sobic006G228300--Sobic006G089300 Sobic006G228300--Sobic010G200700 Sobic006G179500 Sobic006G179500 Sobic006G228300--Sobic006G179500 Sobic001G040200 Sobic001G040200 Sobic006G228300--Sobic001G040200 Sobic001G538866 Sobic001G538866 Sobic006G228300--Sobic001G538866 Sobic002G140300 Sobic002G140300 Sobic006G228300--Sobic002G140300 Sobic001G095300 Sobic001G095300 Sobic006G228300--Sobic001G095300 Sobic006G228300--Sobic002G131800 Sobic001G341600 Sobic001G341600 Sobic006G228300--Sobic001G341600 Sobic007G171000 Sobic007G171000 Sobic003G429300--Sobic007G171000 Sobic003G429300--Sobic006G179500 Sobic008G111100 Sobic008G111100 Sobic003G429300--Sobic008G111100 Sobic003G429300--Sobic002G224100 Sobic003G019200 Sobic003G019200 Sobic003G429300--Sobic003G019200 Sobic002G195900 Sobic002G195900 Sobic003G429300--Sobic002G195900 Sobic003G429300--Sobic006G228300 Sobic003G429300--Sobic010G200700 Sobic002G359300 Sobic002G359300 Sobic003G429300--Sobic002G359300 Sobic004G158901 Sobic004G158901 Sobic002G224100--Sobic004G158901 Sobic002G224100--Sobic003G429300 Sobic007G025700 Sobic007G025700 Sobic002G224100--Sobic007G025700 Sobic004G307000 Sobic004G307000 Sobic002G224100--Sobic004G307000 Sobic003G189200 Sobic003G189200 Sobic002G224100--Sobic003G189200 Sobic005G117400 Sobic005G117400 Sobic002G224100--Sobic005G117400 Sobic002G379866 Sobic002G379866 Sobic002G224100--Sobic002G379866 Sobic002G224100--Sobic007G171000 Sobic002G224100--Sobic008G111100 Sobic003G082000--Sobic010G200700 Sobic009G167000 Sobic009G167000 Sobic003G082000--Sobic009G167000 Sobic002G188700 Sobic002G188700 Sobic003G082000--Sobic002G188700 Sobic003G082000--Sobic004G297200 Sobic003G082000--Sobic002G219200 Sobic009G057400 Sobic009G057400 Sobic003G082000--Sobic009G057400 Sobic003G082000--Sobic004G042600 Sobic003G082000--Sobic003G363200 Sobic004G300300 Sobic004G300300 Sobic003G082000--Sobic004G300300 Sobic002G219200--Sobic009G057400 Sobic002G219200--Sobic003G363200 Sobic002G219200--Sobic010G200700 Sobic001G035000 Sobic001G035000 Sobic002G219200--Sobic001G035000 Sobic002G219200--Sobic004G042600 Sobic006G267000 Sobic006G267000 Sobic002G219200--Sobic006G267000 Sobic006G274300 Sobic006G274300 Sobic002G219200--Sobic006G274300 Sobic002G219200--Sobic003G082000 Sobic002G219200--Sobic010G245800 Sobic002G117100 Sobic002G117100 Sobic001G383000--Sobic002G117100 Sobic001G383000--Sobic006G267000 Sobic006G107200 Sobic006G107200 Sobic001G383000--Sobic006G107200 Sobic007G155200 Sobic007G155200 Sobic001G383000--Sobic007G155200 Sobic002G104900 Sobic002G104900 Sobic001G383000--Sobic002G104900 Sobic001G231600 Sobic001G231600 Sobic001G383000--Sobic001G231600 Sobic003G301000 Sobic003G301000 Sobic001G383000--Sobic003G301000 Sobic001G383000--Sobic002G219200 Sobic003G387200 Sobic003G387200 Sobic001G383000--Sobic003G387200
Octagon: transcription factors


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