Gene annotation
Transcriptome id Sobic.006G195600.1
Synonym Sb06g026810, nPAP, PAP(IV)
Functional annotation expressed protein
UniProt A0A1B6PMV7
Pfam PF01909 PF04926 PF04928
Panther DB PTHR10682 PTHR10682:SF26
NCBI CDD -
KEGG Orthology K14376; poly(A) polymerase
Gene Ontology GO:0016779; nucleotidyltransferase activity GO:0003723RNA binding GO:0004652polynucleotide adenylyltransferase activity GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G32850 : nuclear poly(a) polymerase
RAP-DB (Rice) LOC_Os04g49870.1 : expressed protein
MaizeGDB (Corn) Zm00025a010016
Brachypodium KQJ84274 , PNT61731 , PNT61732
Barley HORVU4Hr1G013750.2 , HORVU2Hr1G105500.4 , HORVU2Hr1G105500.3 , HORVU2Hr1G105500.2 , HORVU4Hr1G013750.1 , HORVU2Hr1G079870.4 , HORVU2Hr1G079870.1 , HORVU2Hr1G079870.3 , HORVU2Hr1G079870.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G031900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.007G158000 expressed protein -
3 Sobic.003G014600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@L-ascorbate oxidase precursor, putative, expressed -
4 Sobic.004G004400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00016: LDH, L-lactate dehydrogenase
5 Sobic.010G221300 expressed protein -
6 Sobic.001G279300 Up-reguralion under heat(PubMedID : 24916767)@VQ domain containing protein, putative, expressed -
7 Sobic.001G280800 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.010G167800 MATE domain containing protein, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.001G201200 - -
10 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.004G022900 expressed protein -
12 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
13 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
14 Sobic.001G371800 expressed protein -
15 Sobic.005G103650 - -
16 Sobic.001G187500 cytochrome P450, putative, expressed -
17 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.006G046900 expressed protein -
19 Sobic.002G261200 expressed protein -
20 Sobic.003G000700 DNA binding protein, putative, expressed -


Gene co-expression network
sample Sobic006G195600 Sobic006G195600 Sobic009G031900 Sobic009G031900 Sobic006G195600--Sobic009G031900 Sobic007G158000 Sobic007G158000 Sobic006G195600--Sobic007G158000 Sobic003G014600 Sobic003G014600 Sobic006G195600--Sobic003G014600 Sobic004G004400 Sobic004G004400 Sobic006G195600--Sobic004G004400 Sobic010G221300 Sobic010G221300 Sobic006G195600--Sobic010G221300 Sobic001G279300 Sobic001G279300 Sobic006G195600--Sobic001G279300 Sobic001G280800 Sobic001G280800 Sobic006G195600--Sobic001G280800 Sobic010G167800 Sobic010G167800 Sobic006G195600--Sobic010G167800 Sobic001G201200 Sobic001G201200 Sobic006G195600--Sobic001G201200 Sobic003G148300 Sobic003G148300 Sobic009G031900--Sobic003G148300 Sobic005G099000 Sobic005G099000 Sobic009G031900--Sobic005G099000 Sobic003G116800 Sobic003G116800 Sobic009G031900--Sobic003G116800 Sobic001G169500 Sobic001G169500 Sobic009G031900--Sobic001G169500 Sobic009G189501 Sobic009G189501 Sobic009G031900--Sobic009G189501 Sobic008G186100 Sobic008G186100 Sobic009G031900--Sobic008G186100 Sobic005G011300 Sobic005G011300 Sobic009G031900--Sobic005G011300 Sobic004G086400 Sobic004G086400 Sobic009G031900--Sobic004G086400 Sobic003G432700 Sobic003G432700 Sobic009G031900--Sobic003G432700 Sobic007G158000--Sobic006G195600 Sobic010G198600 Sobic010G198600 Sobic007G158000--Sobic010G198600 Sobic003G027400 Sobic003G027400 Sobic007G158000--Sobic003G027400 Sobic006G046900 Sobic006G046900 Sobic007G158000--Sobic006G046900 Sobic007G158000--Sobic001G280800 Sobic008G162700 Sobic008G162700 Sobic007G158000--Sobic008G162700 Sobic009G148100 Sobic009G148100 Sobic007G158000--Sobic009G148100 Sobic007G158000--Sobic004G004400 Sobic006G191800 Sobic006G191800 Sobic007G158000--Sobic006G191800 Sobic002G351300 Sobic002G351300 Sobic003G014600--Sobic002G351300 Sobic003G014600--Sobic010G221300 Sobic004G141100 Sobic004G141100 Sobic003G014600--Sobic004G141100 Sobic004G316350 Sobic004G316350 Sobic003G014600--Sobic004G316350 Sobic002G176100 Sobic002G176100 Sobic003G014600--Sobic002G176100 Sobic001G031700 Sobic001G031700 Sobic003G014600--Sobic001G031700 Sobic008G009400 Sobic008G009400 Sobic003G014600--Sobic008G009400 Sobic010G082600 Sobic010G082600 Sobic003G014600--Sobic010G082600 Sobic003G299300 Sobic003G299300 Sobic003G014600--Sobic003G299300 Sobic004G004400--Sobic001G280800 Sobic004G004400--Sobic010G198600 Sobic006G190100 Sobic006G190100 Sobic004G004400--Sobic006G190100 Sobic003G142300 Sobic003G142300 Sobic004G004400--Sobic003G142300 Sobic004G004400--Sobic009G148100 Sobic004G004400--Sobic001G279300 Sobic002G261200 Sobic002G261200 Sobic004G004400--Sobic002G261200 Sobic006G054800 Sobic006G054800 Sobic004G004400--Sobic006G054800 Sobic003G362700 Sobic003G362700 Sobic004G004400--Sobic003G362700 Sobic010G221300--Sobic006G191800 Sobic004G041900 Sobic004G041900 Sobic010G221300--Sobic004G041900 Sobic010G221300--Sobic001G031700 Sobic010G047100 Sobic010G047100 Sobic010G221300--Sobic010G047100 Sobic003G160700 Sobic003G160700 Sobic010G221300--Sobic003G160700 Sobic003G125650 Sobic003G125650 Sobic010G221300--Sobic003G125650 Sobic004G203700 Sobic004G203700 Sobic010G221300--Sobic004G203700 Sobic009G184000 Sobic009G184000 Sobic010G221300--Sobic009G184000 Sobic002G387900 Sobic002G387900 Sobic010G221300--Sobic002G387900 Sobic001G279300--Sobic001G280800 Sobic010G225251 Sobic010G225251 Sobic001G279300--Sobic010G225251 Sobic004G336500 Sobic004G336500 Sobic001G279300--Sobic004G336500 Sobic009G069800 Sobic009G069800 Sobic001G279300--Sobic009G069800 Sobic009G145700 Sobic009G145700 Sobic001G279300--Sobic009G145700 Sobic001G112200 Sobic001G112200 Sobic001G279300--Sobic001G112200 Sobic001G279300--Sobic010G198600 Sobic002G042000 Sobic002G042000 Sobic001G279300--Sobic002G042000 Sobic007G008100 Sobic007G008100 Sobic001G279300--Sobic007G008100 Sobic001G280800--Sobic010G198600 Sobic001G280800--Sobic004G336500 Sobic001G280800--Sobic001G279300 Sobic001G280800--Sobic009G069800 Sobic001G280800--Sobic004G004400 Sobic001G280800--Sobic010G225251 Sobic001G280800--Sobic009G145700 Sobic008G066401 Sobic008G066401 Sobic001G280800--Sobic008G066401 Sobic004G109900 Sobic004G109900 Sobic001G280800--Sobic004G109900 Sobic010G167800--Sobic010G221300 Sobic001G304300 Sobic001G304300 Sobic010G167800--Sobic001G304300 Sobic010G167800--Sobic009G031900 Sobic003G321200 Sobic003G321200 Sobic010G167800--Sobic003G321200 Sobic001G004800 Sobic001G004800 Sobic010G167800--Sobic001G004800 Sobic005G142500 Sobic005G142500 Sobic010G167800--Sobic005G142500 Sobic009G248100 Sobic009G248100 Sobic010G167800--Sobic009G248100 Sobic010G167800--Sobic003G027400 Sobic003G357300 Sobic003G357300 Sobic010G167800--Sobic003G357300 Sobic001G443800 Sobic001G443800 Sobic001G201200--Sobic001G443800 Sobic001G371800 Sobic001G371800 Sobic001G201200--Sobic001G371800 Sobic003G197200 Sobic003G197200 Sobic001G201200--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic001G201200--Sobic010G198500 Sobic001G076100 Sobic001G076100 Sobic001G201200--Sobic001G076100 Sobic007G214600 Sobic007G214600 Sobic001G201200--Sobic007G214600 Sobic001G107800 Sobic001G107800 Sobic001G201200--Sobic001G107800 Sobic003G148600 Sobic003G148600 Sobic001G201200--Sobic003G148600 Sobic007G147700 Sobic007G147700 Sobic001G201200--Sobic007G147700
Octagon: transcription factors


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