Gene annotation
Transcriptome id Sobic.006G218000.1
Synonym Sb06g028770
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5RF07
Pfam -
Panther DB PTHR31722 PTHR31722:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G56020 : -
RAP-DB (Rice) LOC_Os04g52800.1 : expressed protein
MaizeGDB (Corn) Zm00025a009748 , Zm00025a057045
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.006G218000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G078700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
2 Sobic.002G350400 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
3 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
4 Sobic.002G146601 - -
5 Sobic.006G102900 expressed protein -
6 Sobic.010G190300 lipid phosphatase protein, putative, expressed -
7 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
8 Sobic.002G280300 expressed protein -
9 Sobic.003G340100 "domain confirmed by Pfam database, expressed in leaf, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
10 Sobic.001G030400 protein kinase family protein, putative, expressed -
11 Sobic.010G138300 DUF617 domain containing protein, expressed -
12 Sobic.003G290000 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
13 Sobic.005G047100 actin, putative, expressed K10355: actin, other eukaryote
14 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
15 Sobic.001G261549 - -
16 Sobic.007G158000 expressed protein -
17 Sobic.001G429500 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed -
18 Sobic.007G154500 F-box protein, putative, expressed -
19 Sobic.010G144900 fiber protein Fb34, putative, expressed -
20 Sobic.001G260701 -(PubMedID : 26976818) -


Gene co-expression network
sample Sobic006G218000 Sobic006G218000 Sobic001G078700 Sobic001G078700 Sobic006G218000--Sobic001G078700 Sobic002G350400 Sobic002G350400 Sobic006G218000--Sobic002G350400 Sobic003G300900 Sobic003G300900 Sobic006G218000--Sobic003G300900 Sobic002G146601 Sobic002G146601 Sobic006G218000--Sobic002G146601 Sobic006G102900 Sobic006G102900 Sobic006G218000--Sobic006G102900 Sobic010G190300 Sobic010G190300 Sobic006G218000--Sobic010G190300 Sobic003G034600 Sobic003G034600 Sobic006G218000--Sobic003G034600 Sobic002G280300 Sobic002G280300 Sobic006G218000--Sobic002G280300 Sobic003G340100 Sobic003G340100 Sobic006G218000--Sobic003G340100 Sobic001G078700--Sobic006G102900 Sobic001G078700--Sobic003G034600 Sobic003G107200 Sobic003G107200 Sobic001G078700--Sobic003G107200 Sobic003G307400 Sobic003G307400 Sobic001G078700--Sobic003G307400 Sobic004G263700 Sobic004G263700 Sobic001G078700--Sobic004G263700 Sobic006G200000 Sobic006G200000 Sobic001G078700--Sobic006G200000 Sobic001G078700--Sobic010G190300 Sobic001G078700--Sobic003G300900 Sobic010G138300 Sobic010G138300 Sobic001G078700--Sobic010G138300 Sobic001G038300 Sobic001G038300 Sobic002G350400--Sobic001G038300 Sobic001G107200 Sobic001G107200 Sobic002G350400--Sobic001G107200 Sobic003G250700 Sobic003G250700 Sobic002G350400--Sobic003G250700 Sobic003G122200 Sobic003G122200 Sobic002G350400--Sobic003G122200 Sobic001G475500 Sobic001G475500 Sobic002G350400--Sobic001G475500 Sobic005G047100 Sobic005G047100 Sobic002G350400--Sobic005G047100 Sobic001G107100 Sobic001G107100 Sobic002G350400--Sobic001G107100 Sobic001G131600 Sobic001G131600 Sobic002G350400--Sobic001G131600 Sobic002G396400 Sobic002G396400 Sobic002G350400--Sobic002G396400 Sobic008G170500 Sobic008G170500 Sobic003G300900--Sobic008G170500 Sobic003G300900--Sobic010G190300 Sobic008G135500 Sobic008G135500 Sobic003G300900--Sobic008G135500 Sobic003G128700 Sobic003G128700 Sobic003G300900--Sobic003G128700 Sobic001G410200 Sobic001G410200 Sobic003G300900--Sobic001G410200 Sobic003G300900--Sobic006G200000 Sobic001G397000 Sobic001G397000 Sobic003G300900--Sobic001G397000 Sobic006G245500 Sobic006G245500 Sobic003G300900--Sobic006G245500 Sobic010G090100 Sobic010G090100 Sobic003G300900--Sobic010G090100 Sobic005G144600 Sobic005G144600 Sobic002G146601--Sobic005G144600 Sobic002G394500 Sobic002G394500 Sobic002G146601--Sobic002G394500 Sobic007G154500 Sobic007G154500 Sobic002G146601--Sobic007G154500 Sobic007G168900 Sobic007G168900 Sobic002G146601--Sobic007G168900 Sobic002G383100 Sobic002G383100 Sobic002G146601--Sobic002G383100 Sobic010G241100 Sobic010G241100 Sobic002G146601--Sobic010G241100 Sobic003G179500 Sobic003G179500 Sobic002G146601--Sobic003G179500 Sobic003G444100 Sobic003G444100 Sobic002G146601--Sobic003G444100 Sobic006G116500 Sobic006G116500 Sobic002G146601--Sobic006G116500 Sobic001G078600 Sobic001G078600 Sobic006G102900--Sobic001G078600 Sobic006G102900--Sobic003G107200 Sobic009G181500 Sobic009G181500 Sobic006G102900--Sobic009G181500 Sobic001G261549 Sobic001G261549 Sobic006G102900--Sobic001G261549 Sobic006G102900--Sobic007G154500 Sobic002G426800 Sobic002G426800 Sobic006G102900--Sobic002G426800 Sobic010G274000 Sobic010G274000 Sobic006G102900--Sobic010G274000 Sobic004G047100 Sobic004G047100 Sobic006G102900--Sobic004G047100 Sobic009G189200 Sobic009G189200 Sobic006G102900--Sobic009G189200 Sobic010G190300--Sobic003G300900 Sobic010G190300--Sobic001G410200 Sobic010G190300--Sobic003G340100 Sobic009G111400 Sobic009G111400 Sobic010G190300--Sobic009G111400 Sobic010G190300--Sobic006G200000 Sobic004G234100 Sobic004G234100 Sobic010G190300--Sobic004G234100 Sobic004G258900 Sobic004G258900 Sobic010G190300--Sobic004G258900 Sobic003G360100 Sobic003G360100 Sobic010G190300--Sobic003G360100 Sobic009G181800 Sobic009G181800 Sobic010G190300--Sobic009G181800 Sobic004G217450 Sobic004G217450 Sobic003G034600--Sobic004G217450 Sobic003G034600--Sobic003G122200 Sobic003G034600--Sobic001G475500 Sobic003G034600--Sobic003G307400 Sobic006G191800 Sobic006G191800 Sobic003G034600--Sobic006G191800 Sobic003G034600--Sobic006G200000 Sobic003G160700 Sobic003G160700 Sobic003G034600--Sobic003G160700 Sobic009G173500 Sobic009G173500 Sobic003G034600--Sobic009G173500 Sobic007G150800 Sobic007G150800 Sobic003G034600--Sobic007G150800 Sobic004G170900 Sobic004G170900 Sobic002G280300--Sobic004G170900 Sobic004G156900 Sobic004G156900 Sobic002G280300--Sobic004G156900 Sobic002G280300--Sobic005G047100 Sobic009G021700 Sobic009G021700 Sobic002G280300--Sobic009G021700 Sobic004G170800 Sobic004G170800 Sobic002G280300--Sobic004G170800 Sobic002G280300--Sobic001G107200 Sobic009G242501 Sobic009G242501 Sobic002G280300--Sobic009G242501 Sobic001G528600 Sobic001G528600 Sobic002G280300--Sobic001G528600 Sobic008G143000 Sobic008G143000 Sobic002G280300--Sobic008G143000 Sobic003G340100--Sobic010G138300 Sobic006G227500 Sobic006G227500 Sobic003G340100--Sobic006G227500 Sobic009G221500 Sobic009G221500 Sobic003G340100--Sobic009G221500 Sobic001G430100 Sobic001G430100 Sobic003G340100--Sobic001G430100 Sobic007G050200 Sobic007G050200 Sobic003G340100--Sobic007G050200 Sobic003G340100--Sobic010G190300 Sobic008G102800 Sobic008G102800 Sobic003G340100--Sobic008G102800 Sobic002G154600 Sobic002G154600 Sobic003G340100--Sobic002G154600 Sobic003G340100--Sobic003G300900
Octagon: transcription factors


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