Gene annotation
Transcriptome id Sobic.006G240600.1
Synonym
Functional annotation -
UniProt A0A1B6PNL1
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G145500 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.002G243000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
3 Sobic.003G073380 - -
4 Sobic.004G161751 - -
5 Sobic.010G259300 transferase family protein, putative, expressed -
6 Sobic.001G401100 pathogenesis-related Bet v I family protein, putative, expressed -
7 Sobic.009G145600 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.006G154500 GEM, putative, expressed -
9 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
10 Sobic.008G027600 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.004G148200 Cupin domain containing protein, expressed -
12 Sobic.001G449100 E2F-related protein, putative, expressed -
13 Sobic.001G247300 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
14 Sobic.003G079200 - -
15 Sobic.003G050300 peroxidases (PubMedID : 28944535)@peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
17 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.008G158100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
19 Sobic.006G268800 transporter family protein, putative, expressed -
20 Sobic.006G121500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic006G240600 Sobic006G240600 Sobic009G145500 Sobic009G145500 Sobic006G240600--Sobic009G145500 Sobic002G243000 Sobic002G243000 Sobic006G240600--Sobic002G243000 Sobic003G073380 Sobic003G073380 Sobic006G240600--Sobic003G073380 Sobic004G161751 Sobic004G161751 Sobic006G240600--Sobic004G161751 Sobic010G259300 Sobic010G259300 Sobic006G240600--Sobic010G259300 Sobic001G401100 Sobic001G401100 Sobic006G240600--Sobic001G401100 Sobic009G145600 Sobic009G145600 Sobic006G240600--Sobic009G145600 Sobic006G154500 Sobic006G154500 Sobic006G240600--Sobic006G154500 Sobic003G043600 Sobic003G043600 Sobic006G240600--Sobic003G043600 Sobic009G145500--Sobic003G043600 Sobic009G145500--Sobic003G073380 Sobic004G148200 Sobic004G148200 Sobic009G145500--Sobic004G148200 Sobic001G231400 Sobic001G231400 Sobic009G145500--Sobic001G231400 Sobic003G268600 Sobic003G268600 Sobic009G145500--Sobic003G268600 Sobic002G338500 Sobic002G338500 Sobic009G145500--Sobic002G338500 Sobic006G235000 Sobic006G235000 Sobic009G145500--Sobic006G235000 Sobic009G145500--Sobic009G145600 Sobic006G268800 Sobic006G268800 Sobic009G145500--Sobic006G268800 Sobic002G243000--Sobic006G240600 Sobic003G050300 Sobic003G050300 Sobic002G243000--Sobic003G050300 Sobic002G243000--Sobic009G145500 Sobic008G027600 Sobic008G027600 Sobic002G243000--Sobic008G027600 Sobic002G243000--Sobic004G161751 Sobic002G243000--Sobic003G073380 Sobic001G449100 Sobic001G449100 Sobic002G243000--Sobic001G449100 Sobic002G369400 Sobic002G369400 Sobic002G243000--Sobic002G369400 Sobic002G243000--Sobic001G401100 Sobic003G269000 Sobic003G269000 Sobic003G073380--Sobic003G269000 Sobic005G086600 Sobic005G086600 Sobic003G073380--Sobic005G086600 Sobic003G073380--Sobic004G161751 Sobic003G073380--Sobic009G145500 Sobic003G073380--Sobic003G268600 Sobic003G073380--Sobic003G043600 Sobic001G330400 Sobic001G330400 Sobic003G073380--Sobic001G330400 Sobic003G073380--Sobic003G050300 Sobic003G079200 Sobic003G079200 Sobic003G073380--Sobic003G079200 Sobic004G161751--Sobic003G079200 Sobic004G161751--Sobic003G073380 Sobic004G161751--Sobic005G086600 Sobic006G008000 Sobic006G008000 Sobic004G161751--Sobic006G008000 Sobic004G161751--Sobic009G145500 Sobic004G161751--Sobic009G145600 Sobic002G063800 Sobic002G063800 Sobic004G161751--Sobic002G063800 Sobic004G161751--Sobic006G235000 Sobic004G161751--Sobic003G043600 Sobic003G093000 Sobic003G093000 Sobic010G259300--Sobic003G093000 Sobic002G189100 Sobic002G189100 Sobic010G259300--Sobic002G189100 Sobic001G407800 Sobic001G407800 Sobic010G259300--Sobic001G407800 Sobic006G054800 Sobic006G054800 Sobic010G259300--Sobic006G054800 Sobic008G139600 Sobic008G139600 Sobic010G259300--Sobic008G139600 Sobic002G220000 Sobic002G220000 Sobic010G259300--Sobic002G220000 Sobic004G237800 Sobic004G237800 Sobic010G259300--Sobic004G237800 Sobic001G247300 Sobic001G247300 Sobic010G259300--Sobic001G247300 Sobic003G043500 Sobic003G043500 Sobic010G259300--Sobic003G043500 Sobic001G401100--Sobic009G145500 Sobic001G401100--Sobic006G154500 Sobic001G401100--Sobic009G145600 Sobic006G121500 Sobic006G121500 Sobic001G401100--Sobic006G121500 Sobic001G401100--Sobic003G043600 Sobic003G303100 Sobic003G303100 Sobic001G401100--Sobic003G303100 Sobic001G401100--Sobic003G073380 Sobic001G401100--Sobic004G148200 Sobic003G426400 Sobic003G426400 Sobic001G401100--Sobic003G426400 Sobic009G145700 Sobic009G145700 Sobic009G145600--Sobic009G145700 Sobic008G066401 Sobic008G066401 Sobic009G145600--Sobic008G066401 Sobic008G066200 Sobic008G066200 Sobic009G145600--Sobic008G066200 Sobic009G145600--Sobic003G079200 Sobic009G145600--Sobic006G008000 Sobic009G145600--Sobic003G043500 Sobic004G245700 Sobic004G245700 Sobic009G145600--Sobic004G245700 Sobic002G012500 Sobic002G012500 Sobic009G145600--Sobic002G012500 Sobic009G200566 Sobic009G200566 Sobic009G145600--Sobic009G200566 Sobic006G154400 Sobic006G154400 Sobic006G154500--Sobic006G154400 Sobic006G154500--Sobic009G145500 Sobic006G154500--Sobic003G303100 Sobic006G154500--Sobic004G161751 Sobic006G154500--Sobic003G043600 Sobic006G154500--Sobic001G401100 Sobic010G175800 Sobic010G175800 Sobic006G154500--Sobic010G175800 Sobic006G154500--Sobic002G338500 Sobic004G203700 Sobic004G203700 Sobic006G154500--Sobic004G203700 Sobic003G043600--Sobic002G338500 Sobic003G043600--Sobic009G145500 Sobic003G043600--Sobic003G268600 Sobic006G075400 Sobic006G075400 Sobic003G043600--Sobic006G075400 Sobic003G442100 Sobic003G442100 Sobic003G043600--Sobic003G442100 Sobic001G310600 Sobic001G310600 Sobic003G043600--Sobic001G310600 Sobic009G184000 Sobic009G184000 Sobic003G043600--Sobic009G184000 Sobic003G043600--Sobic009G145700 Sobic001G318700 Sobic001G318700 Sobic003G043600--Sobic001G318700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.