Gene annotation
Transcriptome id Sobic.006G248900.2
Synonym Sb06g031410
Functional annotation nucleolar protein,Nop52 containing protein, expressed
UniProt A0A1Z5RFF6
Pfam PF05997
Panther DB PTHR13026 PTHR13026:SF0
NCBI CDD -
KEGG Orthology K14849; ribosomal RNA-processing protein 1
Gene Ontology GO:0006364; rRNA processing


Orthologs (automatic annotation)
TAIR AT5G20600 : -
RAP-DB (Rice) LOC_Os04g56350.1 : nucleolar protein,Nop52 containing protein, expressed
MaizeGDB (Corn) Zm00025a057257 , Zm00025a009457
Brachypodium KQJ85052
Barley HORVU2Hr1G111480.1 , HORVU2Hr1G111480.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G272300 RNA polymerase II transcriptional coactivator KELP, putative, expressed -
2 Sobic.006G255800 - -
3 Sobic.003G054100 expressed protein -
4 Sobic.003G122300 mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
5 Sobic.001G157500 expressed protein -
6 Sobic.009G050100 ATKINESIN-13A/KINESIN-13A, putative, expressed K11091: U1 small nuclear ribonucleoprotein A
7 Sobic.008G088600 expressed protein -
8 Sobic.002G380600 transcription elongation factor SPT4 homolog 1, putative, expressed K15171: SUPT4H1, transcription elongation factor SPT4
9 Sobic.001G013100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
10 Sobic.002G279000 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
11 Sobic.007G073900 histone-lysine N-methyltransferase ASHR2, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
12 Sobic.005G164500 expressed protein -
13 Sobic.002G241000 expressed protein -
14 Sobic.004G210101 - -
15 Sobic.010G079800 expressed protein -
16 Sobic.001G446000 protein kinase, putative, expressed -
17 Sobic.001G013600 expressed protein -
18 Sobic.007G135900 basic helix-loop-helix, putative, expressed -
19 Sobic.004G223900 nucleolar matrix protein-related, putative, expressed -
20 Sobic.001G079100 upstream activation factor subunit spp27, putative, expressed K15223: UAF30, upstream activation factor subunit UAF30


Gene co-expression network
sample Sobic006G248900 Sobic006G248900 Sobic003G272300 Sobic003G272300 Sobic006G248900--Sobic003G272300 Sobic006G255800 Sobic006G255800 Sobic006G248900--Sobic006G255800 Sobic003G054100 Sobic003G054100 Sobic006G248900--Sobic003G054100 Sobic003G122300 Sobic003G122300 Sobic006G248900--Sobic003G122300 Sobic001G157500 Sobic001G157500 Sobic006G248900--Sobic001G157500 Sobic009G050100 Sobic009G050100 Sobic006G248900--Sobic009G050100 Sobic008G088600 Sobic008G088600 Sobic006G248900--Sobic008G088600 Sobic002G380600 Sobic002G380600 Sobic006G248900--Sobic002G380600 Sobic001G013100 Sobic001G013100 Sobic006G248900--Sobic001G013100 Sobic010G079800 Sobic010G079800 Sobic003G272300--Sobic010G079800 Sobic003G382100 Sobic003G382100 Sobic003G272300--Sobic003G382100 Sobic003G272300--Sobic006G248900 Sobic003G272300--Sobic002G380600 Sobic007G153700 Sobic007G153700 Sobic003G272300--Sobic007G153700 Sobic007G050300 Sobic007G050300 Sobic003G272300--Sobic007G050300 Sobic004G206300 Sobic004G206300 Sobic003G272300--Sobic004G206300 Sobic004G027000 Sobic004G027000 Sobic003G272300--Sobic004G027000 Sobic003G098900 Sobic003G098900 Sobic003G272300--Sobic003G098900 Sobic001G013600 Sobic001G013600 Sobic006G255800--Sobic001G013600 Sobic006G255800--Sobic003G054100 Sobic004G180600 Sobic004G180600 Sobic006G255800--Sobic004G180600 Sobic002G293900 Sobic002G293900 Sobic006G255800--Sobic002G293900 Sobic010G027800 Sobic010G027800 Sobic006G255800--Sobic010G027800 Sobic006G245200 Sobic006G245200 Sobic006G255800--Sobic006G245200 Sobic006G255800--Sobic009G050100 Sobic001G150800 Sobic001G150800 Sobic006G255800--Sobic001G150800 Sobic004G109500 Sobic004G109500 Sobic006G255800--Sobic004G109500 Sobic004G172600 Sobic004G172600 Sobic003G054100--Sobic004G172600 Sobic001G487000 Sobic001G487000 Sobic003G054100--Sobic001G487000 Sobic003G049800 Sobic003G049800 Sobic003G054100--Sobic003G049800 Sobic010G231700 Sobic010G231700 Sobic003G054100--Sobic010G231700 Sobic003G054100--Sobic006G255800 Sobic003G395500 Sobic003G395500 Sobic003G054100--Sobic003G395500 Sobic001G072900 Sobic001G072900 Sobic003G054100--Sobic001G072900 Sobic009G228300 Sobic009G228300 Sobic003G054100--Sobic009G228300 Sobic003G095200 Sobic003G095200 Sobic003G054100--Sobic003G095200 Sobic010G110000 Sobic010G110000 Sobic003G122300--Sobic010G110000 Sobic004G345100 Sobic004G345100 Sobic003G122300--Sobic004G345100 Sobic004G160700 Sobic004G160700 Sobic003G122300--Sobic004G160700 Sobic001G462401 Sobic001G462401 Sobic003G122300--Sobic001G462401 Sobic002G280900 Sobic002G280900 Sobic003G122300--Sobic002G280900 Sobic004G196800 Sobic004G196800 Sobic003G122300--Sobic004G196800 Sobic001G154200 Sobic001G154200 Sobic003G122300--Sobic001G154200 Sobic003G119900 Sobic003G119900 Sobic003G122300--Sobic003G119900 Sobic002G403200 Sobic002G403200 Sobic003G122300--Sobic002G403200 Sobic004G210101 Sobic004G210101 Sobic001G157500--Sobic004G210101 Sobic001G157500--Sobic001G150800 Sobic001G157500--Sobic009G050100 Sobic003G284500 Sobic003G284500 Sobic001G157500--Sobic003G284500 Sobic010G097400 Sobic010G097400 Sobic001G157500--Sobic010G097400 Sobic002G270100 Sobic002G270100 Sobic001G157500--Sobic002G270100 Sobic006G177100 Sobic006G177100 Sobic001G157500--Sobic006G177100 Sobic008G075900 Sobic008G075900 Sobic001G157500--Sobic008G075900 Sobic006G258400 Sobic006G258400 Sobic001G157500--Sobic006G258400 Sobic009G050100--Sobic003G284500 Sobic009G050100--Sobic001G150800 Sobic003G128500 Sobic003G128500 Sobic009G050100--Sobic003G128500 Sobic009G050100--Sobic006G177100 Sobic009G050100--Sobic002G270100 Sobic009G050100--Sobic010G097400 Sobic003G377200 Sobic003G377200 Sobic009G050100--Sobic003G377200 Sobic003G148500 Sobic003G148500 Sobic009G050100--Sobic003G148500 Sobic001G210700 Sobic001G210700 Sobic009G050100--Sobic001G210700 Sobic003G227200 Sobic003G227200 Sobic008G088600--Sobic003G227200 Sobic009G068000 Sobic009G068000 Sobic008G088600--Sobic009G068000 Sobic003G358300 Sobic003G358300 Sobic008G088600--Sobic003G358300 Sobic010G106200 Sobic010G106200 Sobic008G088600--Sobic010G106200 Sobic007G073600 Sobic007G073600 Sobic008G088600--Sobic007G073600 Sobic003G012600 Sobic003G012600 Sobic008G088600--Sobic003G012600 Sobic005G091700 Sobic005G091700 Sobic008G088600--Sobic005G091700 Sobic006G231700 Sobic006G231700 Sobic008G088600--Sobic006G231700 Sobic001G216701 Sobic001G216701 Sobic008G088600--Sobic001G216701 Sobic006G056100 Sobic006G056100 Sobic002G380600--Sobic006G056100 Sobic002G380600--Sobic003G272300 Sobic006G160200 Sobic006G160200 Sobic002G380600--Sobic006G160200 Sobic004G190600 Sobic004G190600 Sobic002G380600--Sobic004G190600 Sobic002G289800 Sobic002G289800 Sobic002G380600--Sobic002G289800 Sobic001G440900 Sobic001G440900 Sobic002G380600--Sobic001G440900 Sobic001G300400 Sobic001G300400 Sobic002G380600--Sobic001G300400 Sobic006G183600 Sobic006G183600 Sobic002G380600--Sobic006G183600 Sobic001G172800 Sobic001G172800 Sobic002G380600--Sobic001G172800 Sobic009G057200 Sobic009G057200 Sobic001G013100--Sobic009G057200 Sobic001G436300 Sobic001G436300 Sobic001G013100--Sobic001G436300 Sobic006G258000 Sobic006G258000 Sobic001G013100--Sobic006G258000 Sobic001G115500 Sobic001G115500 Sobic001G013100--Sobic001G115500 Sobic001G469200 Sobic001G469200 Sobic001G013100--Sobic001G469200 Sobic002G317600 Sobic002G317600 Sobic001G013100--Sobic002G317600 Sobic005G164500 Sobic005G164500 Sobic001G013100--Sobic005G164500 Sobic006G032600 Sobic006G032600 Sobic001G013100--Sobic006G032600 Sobic006G245700 Sobic006G245700 Sobic001G013100--Sobic006G245700
Octagon: transcription factors


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