Gene annotation
Transcriptome id Sobic.008G088600.1
Synonym Sb08g009810
Functional annotation expressed protein
UniProt C5YU62
Pfam PF15341
Panther DB PTHR31109
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01640 : -
RAP-DB (Rice) LOC_Os12g14110.1 : expressed protein
MaizeGDB (Corn) Zm00025a024983
Brachypodium -
Barley HORVU2Hr1G082280.8 , HORVU2Hr1G082280.5 , HORVU2Hr1G082280.6 , HORVU2Hr1G082280.1 , HORVU2Hr1G082280.2 , HORVU2Hr1G082280.3
Wheat -
Populus -


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cDNA sequences
Sobic.008G088600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G227200 mitochondrial import receptor subunit TOM7-1, putative, expressed K17771: mitochondrial import receptor subunit TOM7
2 Sobic.009G068000 late embryogenesis abundant protein, putative, expressed -
3 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
4 Sobic.010G106200 signal recognition particle 9 kDa protein, putative, expressed K03109: signal recognition particle subunit SRP9
5 Sobic.007G073600 expressed protein K16585: HAUS augmin-like complex subunit 2
6 Sobic.003G012600 expressed protein -
7 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
8 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
9 Sobic.001G216701 - -
10 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
11 Sobic.002G280200 Skp1 family, dimerisation domain containing protein, expressed K03094: SKP1, S-phase kinase-associated protein 1
12 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
13 Sobic.003G224300 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
14 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
15 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
16 Sobic.008G033300 sodium/calcium exchanger protein, putative, expressed K13754: SLC24A6, solute carrier family 24 (sodium/potassium/calcium exchanger), member 6
17 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
18 Sobic.009G191600 tesmin/TSO1-like CXC domain containing protein, expressed -
19 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
20 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3


Gene co-expression network
sample Sobic008G088600 Sobic008G088600 Sobic003G227200 Sobic003G227200 Sobic008G088600--Sobic003G227200 Sobic009G068000 Sobic009G068000 Sobic008G088600--Sobic009G068000 Sobic003G358300 Sobic003G358300 Sobic008G088600--Sobic003G358300 Sobic010G106200 Sobic010G106200 Sobic008G088600--Sobic010G106200 Sobic007G073600 Sobic007G073600 Sobic008G088600--Sobic007G073600 Sobic003G012600 Sobic003G012600 Sobic008G088600--Sobic003G012600 Sobic005G091700 Sobic005G091700 Sobic008G088600--Sobic005G091700 Sobic006G231700 Sobic006G231700 Sobic008G088600--Sobic006G231700 Sobic001G216701 Sobic001G216701 Sobic008G088600--Sobic001G216701 Sobic003G227200--Sobic008G088600 Sobic004G012800 Sobic004G012800 Sobic003G227200--Sobic004G012800 Sobic003G253500 Sobic003G253500 Sobic003G227200--Sobic003G253500 Sobic009G191600 Sobic009G191600 Sobic003G227200--Sobic009G191600 Sobic006G099800 Sobic006G099800 Sobic003G227200--Sobic006G099800 Sobic009G171100 Sobic009G171100 Sobic003G227200--Sobic009G171100 Sobic001G441000 Sobic001G441000 Sobic003G227200--Sobic001G441000 Sobic001G148700 Sobic001G148700 Sobic003G227200--Sobic001G148700 Sobic010G201388 Sobic010G201388 Sobic003G227200--Sobic010G201388 Sobic007G161700 Sobic007G161700 Sobic009G068000--Sobic007G161700 Sobic002G296200 Sobic002G296200 Sobic009G068000--Sobic002G296200 Sobic004G060500 Sobic004G060500 Sobic009G068000--Sobic004G060500 Sobic010G059300 Sobic010G059300 Sobic009G068000--Sobic010G059300 Sobic001G047800 Sobic001G047800 Sobic009G068000--Sobic001G047800 Sobic009G068000--Sobic008G088600 Sobic002G309700 Sobic002G309700 Sobic009G068000--Sobic002G309700 Sobic003G141700 Sobic003G141700 Sobic009G068000--Sobic003G141700 Sobic007G013900 Sobic007G013900 Sobic009G068000--Sobic007G013900 Sobic001G066700 Sobic001G066700 Sobic003G358300--Sobic001G066700 Sobic003G358300--Sobic006G231700 Sobic005G111100 Sobic005G111100 Sobic003G358300--Sobic005G111100 Sobic002G044000 Sobic002G044000 Sobic003G358300--Sobic002G044000 Sobic004G032000 Sobic004G032000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic002G386300 Sobic002G386300 Sobic003G358300--Sobic002G386300 Sobic007G163700 Sobic007G163700 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic001G084900 Sobic001G084900 Sobic010G106200--Sobic001G084900 Sobic001G175300 Sobic001G175300 Sobic010G106200--Sobic001G175300 Sobic001G403500 Sobic001G403500 Sobic010G106200--Sobic001G403500 Sobic002G049300 Sobic002G049300 Sobic010G106200--Sobic002G049300 Sobic007G190800 Sobic007G190800 Sobic010G106200--Sobic007G190800 Sobic010G204500 Sobic010G204500 Sobic010G106200--Sobic010G204500 Sobic009G022400 Sobic009G022400 Sobic010G106200--Sobic009G022400 Sobic001G377800 Sobic001G377800 Sobic010G106200--Sobic001G377800 Sobic002G286900 Sobic002G286900 Sobic010G106200--Sobic002G286900 Sobic004G123000 Sobic004G123000 Sobic007G073600--Sobic004G123000 Sobic001G402600 Sobic001G402600 Sobic007G073600--Sobic001G402600 Sobic007G073600--Sobic003G358300 Sobic007G192100 Sobic007G192100 Sobic007G073600--Sobic007G192100 Sobic009G164700 Sobic009G164700 Sobic007G073600--Sobic009G164700 Sobic009G054000 Sobic009G054000 Sobic007G073600--Sobic009G054000 Sobic001G013200 Sobic001G013200 Sobic007G073600--Sobic001G013200 Sobic001G035400 Sobic001G035400 Sobic007G073600--Sobic001G035400 Sobic006G203900 Sobic006G203900 Sobic007G073600--Sobic006G203900 Sobic003G012600--Sobic008G088600 Sobic001G162000 Sobic001G162000 Sobic003G012600--Sobic001G162000 Sobic003G012600--Sobic003G227200 Sobic003G012600--Sobic007G073600 Sobic003G108200 Sobic003G108200 Sobic003G012600--Sobic003G108200 Sobic010G095600 Sobic010G095600 Sobic003G012600--Sobic010G095600 Sobic001G525400 Sobic001G525400 Sobic003G012600--Sobic001G525400 Sobic004G257300 Sobic004G257300 Sobic003G012600--Sobic004G257300 Sobic003G012600--Sobic004G123000 Sobic001G513500 Sobic001G513500 Sobic005G091700--Sobic001G513500 Sobic010G100000 Sobic010G100000 Sobic005G091700--Sobic010G100000 Sobic009G101700 Sobic009G101700 Sobic005G091700--Sobic009G101700 Sobic001G018800 Sobic001G018800 Sobic005G091700--Sobic001G018800 Sobic003G129800 Sobic003G129800 Sobic005G091700--Sobic003G129800 Sobic002G331300 Sobic002G331300 Sobic005G091700--Sobic002G331300 Sobic009G179100 Sobic009G179100 Sobic005G091700--Sobic009G179100 Sobic001G011200 Sobic001G011200 Sobic005G091700--Sobic001G011200 Sobic005G050500 Sobic005G050500 Sobic005G091700--Sobic005G050500 Sobic006G231700--Sobic005G111100 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G013900 Sobic006G013900 Sobic006G231700--Sobic006G013900 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic004G137900 Sobic004G137900 Sobic006G231700--Sobic004G137900 Sobic001G392800 Sobic001G392800 Sobic001G216701--Sobic001G392800 Sobic009G001900 Sobic009G001900 Sobic001G216701--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic001G216701--Sobic004G066800 Sobic001G216701--Sobic004G012800 Sobic009G212300 Sobic009G212300 Sobic001G216701--Sobic009G212300 Sobic001G286300 Sobic001G286300 Sobic001G216701--Sobic001G286300 Sobic001G216701--Sobic007G013900 Sobic006G231500 Sobic006G231500 Sobic001G216701--Sobic006G231500 Sobic001G216701--Sobic002G296200
Octagon: transcription factors


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