Gene annotation
Transcriptome id Sobic.006G275800.1
Synonym Sb06g033720, ATIMD2, IMD2
Functional annotation dehydrogenase, putative, expressed
UniProt C5YB10
Pfam PF00180
Panther DB PTHR11835 PTHR11835:SF53
NCBI CDD -
KEGG Orthology K00052; leuB, 3-isopropylmalate dehydrogenase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT1G80560 : isopropylmalate dehydrogenase 2
RAP-DB (Rice) LOC_Os03g45320.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a057474 , Zm00025a010492
Brachypodium KQJ85415
Barley HORVU3Hr1G000570.9 , HORVU3Hr1G000570.8 , HORVU3Hr1G000570.1 , HORVU3Hr1G000570.3 , HORVU3Hr1G000570.2 , HORVU3Hr1G000570.5 , HORVU3Hr1G000570.4 , HORVU3Hr1G000570.7 , HORVU3Hr1G000570.6 , HORVU2Hr1G124400.5 , HORVU2Hr1G124400.4 , HORVU2Hr1G124400.1 , HORVU2Hr1G124400.3 , HORVU2Hr1G124400.2 , HORVU3Hr1G000570.11 , HORVU3Hr1G000570.10
Wheat TraesCS3D02G007500 , TraesCS3B02G006100 , TraesCSU02G040000 , TraesCS2A02G577600 , TraesCS2D02G589000 , TraesCS2B02G609800
Populus PNT55303 , PNT55305 , PNT55304


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cDNA sequences
Sobic.006G275800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G244500 ATP phosphoribosyltransferase, putative, expressed K00765: ATP phosphoribosyltransferase
2 Sobic.009G130500 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
3 Sobic.010G216300 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
4 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
5 Sobic.001G416700 arginine biosynthesis bifunctional protein argJ 1, putative, expressed K00620: glutamate N-acetyltransferase / amino-acid N-acetyltransferase
6 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -
7 Sobic.006G258000 regulatory protein RecX family protein, putative, expressed -
8 Sobic.004G214400 tic20, putative, expressed -
9 Sobic.001G456800 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
10 Sobic.010G221600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
11 Sobic.001G401700 aminotransferase, classes I and II, domain containing protein, expressed K10206: LL-diaminopimelate aminotransferase
12 Sobic.002G332400 PPR repeat domain containing protein, putative, expressed -
13 Sobic.004G268100 ornithine carbamoyltransferase, putative, expressed K00611: OTC, argF, ornithine carbamoyltransferase
14 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
15 Sobic.005G187400 A49-like RNA polymerase I associated factor family protein, expressed K03005: RPA49, DNA-directed RNA polymerase I subunit RPA49
16 Sobic.002G119400 protein kinase, putative, expressed K13436: pto-interacting protein 1
17 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
18 Sobic.004G296800 3-isopropylmalate dehydratase small subunit 2, putative, expressed K01704: leuD, 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
19 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
20 Sobic.010G108900 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23


Gene co-expression network
sample Sobic006G275800 Sobic006G275800 Sobic002G244500 Sobic002G244500 Sobic006G275800--Sobic002G244500 Sobic009G130500 Sobic009G130500 Sobic006G275800--Sobic009G130500 Sobic010G216300 Sobic010G216300 Sobic006G275800--Sobic010G216300 Sobic001G178400 Sobic001G178400 Sobic006G275800--Sobic001G178400 Sobic001G416700 Sobic001G416700 Sobic006G275800--Sobic001G416700 Sobic009G124000 Sobic009G124000 Sobic006G275800--Sobic009G124000 Sobic006G258000 Sobic006G258000 Sobic006G275800--Sobic006G258000 Sobic004G214400 Sobic004G214400 Sobic006G275800--Sobic004G214400 Sobic001G456800 Sobic001G456800 Sobic006G275800--Sobic001G456800 Sobic002G244500--Sobic009G124000 Sobic002G244500--Sobic006G275800 Sobic008G067100 Sobic008G067100 Sobic002G244500--Sobic008G067100 Sobic010G221600 Sobic010G221600 Sobic002G244500--Sobic010G221600 Sobic003G265500 Sobic003G265500 Sobic002G244500--Sobic003G265500 Sobic004G275600 Sobic004G275600 Sobic002G244500--Sobic004G275600 Sobic004G144400 Sobic004G144400 Sobic002G244500--Sobic004G144400 Sobic003G420900 Sobic003G420900 Sobic002G244500--Sobic003G420900 Sobic002G333100 Sobic002G333100 Sobic002G244500--Sobic002G333100 Sobic006G193300 Sobic006G193300 Sobic009G130500--Sobic006G193300 Sobic009G130500--Sobic006G275800 Sobic003G332100 Sobic003G332100 Sobic009G130500--Sobic003G332100 Sobic004G126000 Sobic004G126000 Sobic009G130500--Sobic004G126000 Sobic009G045900 Sobic009G045900 Sobic009G130500--Sobic009G045900 Sobic002G317100 Sobic002G317100 Sobic009G130500--Sobic002G317100 Sobic009G130500--Sobic001G178400 Sobic004G340400 Sobic004G340400 Sobic009G130500--Sobic004G340400 Sobic010G081700 Sobic010G081700 Sobic009G130500--Sobic010G081700 Sobic006G157000 Sobic006G157000 Sobic010G216300--Sobic006G157000 Sobic003G407600 Sobic003G407600 Sobic010G216300--Sobic003G407600 Sobic006G010400 Sobic006G010400 Sobic010G216300--Sobic006G010400 Sobic001G007800 Sobic001G007800 Sobic010G216300--Sobic001G007800 Sobic006G084000 Sobic006G084000 Sobic010G216300--Sobic006G084000 Sobic008G160000 Sobic008G160000 Sobic010G216300--Sobic008G160000 Sobic003G309300 Sobic003G309300 Sobic010G216300--Sobic003G309300 Sobic009G071700 Sobic009G071700 Sobic010G216300--Sobic009G071700 Sobic007G143500 Sobic007G143500 Sobic010G216300--Sobic007G143500 Sobic008G118500 Sobic008G118500 Sobic001G178400--Sobic008G118500 Sobic001G291800 Sobic001G291800 Sobic001G178400--Sobic001G291800 Sobic009G102900 Sobic009G102900 Sobic001G178400--Sobic009G102900 Sobic001G178400--Sobic001G007800 Sobic001G469200 Sobic001G469200 Sobic001G178400--Sobic001G469200 Sobic001G455800 Sobic001G455800 Sobic001G178400--Sobic001G455800 Sobic004G307500 Sobic004G307500 Sobic001G178400--Sobic004G307500 Sobic002G365900 Sobic002G365900 Sobic001G178400--Sobic002G365900 Sobic001G178400--Sobic008G160000 Sobic001G393700 Sobic001G393700 Sobic001G416700--Sobic001G393700 Sobic007G187600 Sobic007G187600 Sobic001G416700--Sobic007G187600 Sobic001G416700--Sobic007G143500 Sobic001G416700--Sobic004G340400 Sobic001G416700--Sobic001G291800 Sobic001G416700--Sobic004G307500 Sobic001G145400 Sobic001G145400 Sobic001G416700--Sobic001G145400 Sobic001G334100 Sobic001G334100 Sobic001G416700--Sobic001G334100 Sobic001G168900 Sobic001G168900 Sobic001G416700--Sobic001G168900 Sobic001G486700 Sobic001G486700 Sobic009G124000--Sobic001G486700 Sobic008G183700 Sobic008G183700 Sobic009G124000--Sobic008G183700 Sobic001G376700 Sobic001G376700 Sobic009G124000--Sobic001G376700 Sobic009G124000--Sobic004G275600 Sobic001G401700 Sobic001G401700 Sobic009G124000--Sobic001G401700 Sobic007G208300 Sobic007G208300 Sobic009G124000--Sobic007G208300 Sobic003G292300 Sobic003G292300 Sobic009G124000--Sobic003G292300 Sobic009G124000--Sobic002G244500 Sobic009G124000--Sobic010G221600 Sobic001G013100 Sobic001G013100 Sobic006G258000--Sobic001G013100 Sobic006G258000--Sobic006G275800 Sobic001G484200 Sobic001G484200 Sobic006G258000--Sobic001G484200 Sobic004G128200 Sobic004G128200 Sobic006G258000--Sobic004G128200 Sobic001G208700 Sobic001G208700 Sobic006G258000--Sobic001G208700 Sobic004G235300 Sobic004G235300 Sobic006G258000--Sobic004G235300 Sobic005G046900 Sobic005G046900 Sobic006G258000--Sobic005G046900 Sobic007G102700 Sobic007G102700 Sobic006G258000--Sobic007G102700 Sobic007G201800 Sobic007G201800 Sobic006G258000--Sobic007G201800 Sobic001G375000 Sobic001G375000 Sobic004G214400--Sobic001G375000 Sobic004G263200 Sobic004G263200 Sobic004G214400--Sobic004G263200 Sobic006G281066 Sobic006G281066 Sobic004G214400--Sobic006G281066 Sobic007G101300 Sobic007G101300 Sobic004G214400--Sobic007G101300 Sobic006G088000 Sobic006G088000 Sobic004G214400--Sobic006G088000 Sobic001G433100 Sobic001G433100 Sobic004G214400--Sobic001G433100 Sobic010G027200 Sobic010G027200 Sobic004G214400--Sobic010G027200 Sobic006G237100 Sobic006G237100 Sobic004G214400--Sobic006G237100 Sobic004G003900 Sobic004G003900 Sobic004G214400--Sobic004G003900 Sobic003G046300 Sobic003G046300 Sobic001G456800--Sobic003G046300 Sobic005G175000 Sobic005G175000 Sobic001G456800--Sobic005G175000 Sobic006G188500 Sobic006G188500 Sobic001G456800--Sobic006G188500 Sobic008G024800 Sobic008G024800 Sobic001G456800--Sobic008G024800 Sobic001G456800--Sobic008G118500 Sobic001G456800--Sobic001G469200 Sobic002G199400 Sobic002G199400 Sobic001G456800--Sobic002G199400 Sobic006G087100 Sobic006G087100 Sobic001G456800--Sobic006G087100 Sobic008G017200 Sobic008G017200 Sobic001G456800--Sobic008G017200
Octagon: transcription factors


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