Gene annotation
Transcriptome id Sobic.006G258000.2,Sobic.006G258000.1
Synonym Sb06g032130
Functional annotation regulatory protein RecX family protein, putative, expressed
UniProt A0A120GUX9 , A0A120GUU1 , C5YA14 , A0A1Z5RFK6
Pfam PF02631
Panther DB PTHR33602 PTHR33602:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006282; regulation of DNA repair


Orthologs (automatic annotation)
TAIR AT3G13226 : regulatory protein RecX family protein
RAP-DB (Rice) LOC_Os04g57230.1 : regulatory protein RecX family protein, putative, expressed
MaizeGDB (Corn) Zm00025a057322
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G013100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
2 Sobic.006G275800 dehydrogenase, putative, expressed K00052: leuB, 3-isopropylmalate dehydrogenase
3 Sobic.001G484200 "RGA1/D1(Ortholog in rice:Ashikari, 1999)"(PubMedID : 31659848)@G-protein alpha subunit, putative, expressed K04640: guanine nucleotide-binding protein subunit alpha, other
4 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
5 Sobic.001G208700 ATTIC110/TIC110, putative, expressed -
6 Sobic.004G235300 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
7 Sobic.005G046900 expressed protein K08331: autophagy-related protein 13
8 Sobic.007G102700 - -
9 Sobic.007G201800 DNA repair ATPase-related, putative, expressed -
10 Sobic.004G214400 tic20, putative, expressed -
11 Sobic.001G540800 DNA binding protein, putative, expressed -
12 Sobic.007G183300 expressed protein -
13 Sobic.001G441200 translocase of chloroplast 34, putative, expressed -
14 Sobic.001G371700 zinc finger protein, putative, expressed -
15 Sobic.006G002400 amidase family protein, putative, expressed -
16 Sobic.001G423300 outer membrane protein, OMP85 family, putative, expressed -
17 Sobic.002G332400 PPR repeat domain containing protein, putative, expressed -
18 Sobic.010G141600 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K00122: formate dehydrogenase
19 Sobic.009G201900 peptidyl-tRNA hydrolase, putative, expressed K04794: peptidyl-tRNA hydrolase, PTH2 family
20 Sobic.010G015900 transcriptional corepressor SEUSS, putative, expressed -


Gene co-expression network
sample Sobic006G258000 Sobic006G258000 Sobic001G013100 Sobic001G013100 Sobic006G258000--Sobic001G013100 Sobic006G275800 Sobic006G275800 Sobic006G258000--Sobic006G275800 Sobic001G484200 Sobic001G484200 Sobic006G258000--Sobic001G484200 Sobic004G128200 Sobic004G128200 Sobic006G258000--Sobic004G128200 Sobic001G208700 Sobic001G208700 Sobic006G258000--Sobic001G208700 Sobic004G235300 Sobic004G235300 Sobic006G258000--Sobic004G235300 Sobic005G046900 Sobic005G046900 Sobic006G258000--Sobic005G046900 Sobic007G102700 Sobic007G102700 Sobic006G258000--Sobic007G102700 Sobic007G201800 Sobic007G201800 Sobic006G258000--Sobic007G201800 Sobic009G057200 Sobic009G057200 Sobic001G013100--Sobic009G057200 Sobic001G436300 Sobic001G436300 Sobic001G013100--Sobic001G436300 Sobic001G013100--Sobic006G258000 Sobic001G115500 Sobic001G115500 Sobic001G013100--Sobic001G115500 Sobic001G469200 Sobic001G469200 Sobic001G013100--Sobic001G469200 Sobic002G317600 Sobic002G317600 Sobic001G013100--Sobic002G317600 Sobic005G164500 Sobic005G164500 Sobic001G013100--Sobic005G164500 Sobic006G032600 Sobic006G032600 Sobic001G013100--Sobic006G032600 Sobic006G245700 Sobic006G245700 Sobic001G013100--Sobic006G245700 Sobic002G244500 Sobic002G244500 Sobic006G275800--Sobic002G244500 Sobic009G130500 Sobic009G130500 Sobic006G275800--Sobic009G130500 Sobic010G216300 Sobic010G216300 Sobic006G275800--Sobic010G216300 Sobic001G178400 Sobic001G178400 Sobic006G275800--Sobic001G178400 Sobic001G416700 Sobic001G416700 Sobic006G275800--Sobic001G416700 Sobic009G124000 Sobic009G124000 Sobic006G275800--Sobic009G124000 Sobic006G275800--Sobic006G258000 Sobic004G214400 Sobic004G214400 Sobic006G275800--Sobic004G214400 Sobic001G456800 Sobic001G456800 Sobic006G275800--Sobic001G456800 Sobic002G148400 Sobic002G148400 Sobic001G484200--Sobic002G148400 Sobic008G057000 Sobic008G057000 Sobic001G484200--Sobic008G057000 Sobic010G233000 Sobic010G233000 Sobic001G484200--Sobic010G233000 Sobic001G373000 Sobic001G373000 Sobic001G484200--Sobic001G373000 Sobic001G346900 Sobic001G346900 Sobic001G484200--Sobic001G346900 Sobic004G043750 Sobic004G043750 Sobic001G484200--Sobic004G043750 Sobic003G409200 Sobic003G409200 Sobic001G484200--Sobic003G409200 Sobic001G013300 Sobic001G013300 Sobic001G484200--Sobic001G013300 Sobic009G235200 Sobic009G235200 Sobic001G484200--Sobic009G235200 Sobic005G199200 Sobic005G199200 Sobic004G128200--Sobic005G199200 Sobic001G367100 Sobic001G367100 Sobic004G128200--Sobic001G367100 Sobic010G279900 Sobic010G279900 Sobic004G128200--Sobic010G279900 Sobic001G315400 Sobic001G315400 Sobic004G128200--Sobic001G315400 Sobic004G128200--Sobic003G409200 Sobic001G090300 Sobic001G090300 Sobic004G128200--Sobic001G090300 Sobic002G145800 Sobic002G145800 Sobic004G128200--Sobic002G145800 Sobic007G183300 Sobic007G183300 Sobic004G128200--Sobic007G183300 Sobic008G017100 Sobic008G017100 Sobic004G128200--Sobic008G017100 Sobic008G088200 Sobic008G088200 Sobic001G208700--Sobic008G088200 Sobic006G056700 Sobic006G056700 Sobic001G208700--Sobic006G056700 Sobic009G085200 Sobic009G085200 Sobic001G208700--Sobic009G085200 Sobic004G213800 Sobic004G213800 Sobic001G208700--Sobic004G213800 Sobic009G129100 Sobic009G129100 Sobic001G208700--Sobic009G129100 Sobic001G058200 Sobic001G058200 Sobic001G208700--Sobic001G058200 Sobic001G379200 Sobic001G379200 Sobic001G208700--Sobic001G379200 Sobic004G137801 Sobic004G137801 Sobic001G208700--Sobic004G137801 Sobic006G096900 Sobic006G096900 Sobic001G208700--Sobic006G096900 Sobic004G155600 Sobic004G155600 Sobic004G235300--Sobic004G155600 Sobic002G425500 Sobic002G425500 Sobic004G235300--Sobic002G425500 Sobic001G461400 Sobic001G461400 Sobic004G235300--Sobic001G461400 Sobic010G237900 Sobic010G237900 Sobic004G235300--Sobic010G237900 Sobic006G080400 Sobic006G080400 Sobic004G235300--Sobic006G080400 Sobic001G002600 Sobic001G002600 Sobic004G235300--Sobic001G002600 Sobic001G501800 Sobic001G501800 Sobic004G235300--Sobic001G501800 Sobic001G151100 Sobic001G151100 Sobic004G235300--Sobic001G151100 Sobic001G275300 Sobic001G275300 Sobic004G235300--Sobic001G275300 Sobic006G276000 Sobic006G276000 Sobic005G046900--Sobic006G276000 Sobic007G041300 Sobic007G041300 Sobic005G046900--Sobic007G041300 Sobic005G079800 Sobic005G079800 Sobic005G046900--Sobic005G079800 Sobic003G427100 Sobic003G427100 Sobic005G046900--Sobic003G427100 Sobic005G046900--Sobic001G013300 Sobic006G120800 Sobic006G120800 Sobic005G046900--Sobic006G120800 Sobic005G046900--Sobic008G057000 Sobic005G191700 Sobic005G191700 Sobic005G046900--Sobic005G191700 Sobic005G046900--Sobic003G409200 Sobic007G102700--Sobic007G041300 Sobic004G156800 Sobic004G156800 Sobic007G102700--Sobic004G156800 Sobic007G102700--Sobic010G237900 Sobic004G129300 Sobic004G129300 Sobic007G102700--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic007G102700--Sobic007G191700 Sobic001G244300 Sobic001G244300 Sobic007G102700--Sobic001G244300 Sobic001G473600 Sobic001G473600 Sobic007G102700--Sobic001G473600 Sobic010G186600 Sobic010G186600 Sobic007G102700--Sobic010G186600 Sobic001G114500 Sobic001G114500 Sobic007G102700--Sobic001G114500 Sobic007G201800--Sobic004G128200 Sobic002G029100 Sobic002G029100 Sobic007G201800--Sobic002G029100 Sobic003G052800 Sobic003G052800 Sobic007G201800--Sobic003G052800 Sobic007G201800--Sobic007G041300 Sobic007G201800--Sobic005G046900 Sobic007G201800--Sobic007G183300 Sobic001G178300 Sobic001G178300 Sobic007G201800--Sobic001G178300 Sobic007G201800--Sobic005G191700 Sobic009G255600 Sobic009G255600 Sobic007G201800--Sobic009G255600
Octagon: transcription factors


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