Gene annotation
Transcriptome id Sobic.009G130500.2,Sobic.009G130500.1
Synonym APG10, Sb09g019700, HISN3
Functional annotation 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed
UniProt C5YXM8
Pfam PF00977
Panther DB PTHR21235 PTHR21235:SF23
NCBI CDD KOG3055; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
KEGG Orthology K01814; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Gene Ontology GO:0000105; histidine biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G36230 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os05g33260.2 : 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a002894 , Zm00025a043629
Brachypodium KQK06356
Barley HORVU3Hr1G016160.1 , HORVU3Hr1G016160.2 , HORVU1Hr1G061820.4 , HORVU1Hr1G061820.5 , HORVU1Hr1G061820.6 , HORVU1Hr1G061820.7 , HORVU1Hr1G061820.2 , HORVU1Hr1G061820.3 , HORVU7Hr1G068820.1 , HORVU5Hr1G030850.2 , HORVU5Hr1G030850.1
Wheat TraesCS1A02G251000 , TraesCS1D02G250600 , TraesCS1B02G261600
Populus PNT40310


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
2 Sobic.006G275800 dehydrogenase, putative, expressed K00052: leuB, 3-isopropylmalate dehydrogenase
3 Sobic.003G332100 histidine triad family protein, putative, expressed -
4 Sobic.004G126000 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed K18914: adrenodoxin-NADP+ reductase
5 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
6 Sobic.002G317100 PPR repeat containing protein, expressed -
7 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
8 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
9 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
10 Sobic.005G168000 Rf1, mitochondrial precursor, putative, expressed -
11 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
12 Sobic.001G206500 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
13 Sobic.010G086500 cellulase, putative, expressed -
14 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
15 Sobic.003G151000 AGAP010768-PA, putative, expressed -
16 Sobic.001G346600 kinesin heavy chain isolog, putative, expressed -
17 Sobic.002G047000 YT521-B, putative, expressed -
18 Sobic.008G151366 - -
19 Sobic.004G067400 expressed protein -
20 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein


Gene co-expression network
sample Sobic009G130500 Sobic009G130500 Sobic006G193300 Sobic006G193300 Sobic009G130500--Sobic006G193300 Sobic006G275800 Sobic006G275800 Sobic009G130500--Sobic006G275800 Sobic003G332100 Sobic003G332100 Sobic009G130500--Sobic003G332100 Sobic004G126000 Sobic004G126000 Sobic009G130500--Sobic004G126000 Sobic009G045900 Sobic009G045900 Sobic009G130500--Sobic009G045900 Sobic002G317100 Sobic002G317100 Sobic009G130500--Sobic002G317100 Sobic001G178400 Sobic001G178400 Sobic009G130500--Sobic001G178400 Sobic004G340400 Sobic004G340400 Sobic009G130500--Sobic004G340400 Sobic010G081700 Sobic010G081700 Sobic009G130500--Sobic010G081700 Sobic006G193300--Sobic004G340400 Sobic001G429600 Sobic001G429600 Sobic006G193300--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic006G193300--Sobic001G461300 Sobic002G408900 Sobic002G408900 Sobic006G193300--Sobic002G408900 Sobic008G049100 Sobic008G049100 Sobic006G193300--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic006G193300--Sobic009G246500 Sobic006G125900 Sobic006G125900 Sobic006G193300--Sobic006G125900 Sobic001G401500 Sobic001G401500 Sobic006G193300--Sobic001G401500 Sobic003G199300 Sobic003G199300 Sobic006G193300--Sobic003G199300 Sobic002G244500 Sobic002G244500 Sobic006G275800--Sobic002G244500 Sobic006G275800--Sobic009G130500 Sobic010G216300 Sobic010G216300 Sobic006G275800--Sobic010G216300 Sobic006G275800--Sobic001G178400 Sobic001G416700 Sobic001G416700 Sobic006G275800--Sobic001G416700 Sobic009G124000 Sobic009G124000 Sobic006G275800--Sobic009G124000 Sobic006G258000 Sobic006G258000 Sobic006G275800--Sobic006G258000 Sobic004G214400 Sobic004G214400 Sobic006G275800--Sobic004G214400 Sobic001G456800 Sobic001G456800 Sobic006G275800--Sobic001G456800 Sobic003G332100--Sobic009G130500 Sobic006G073200 Sobic006G073200 Sobic003G332100--Sobic006G073200 Sobic004G268100 Sobic004G268100 Sobic003G332100--Sobic004G268100 Sobic004G156800 Sobic004G156800 Sobic003G332100--Sobic004G156800 Sobic008G024800 Sobic008G024800 Sobic003G332100--Sobic008G024800 Sobic009G029700 Sobic009G029700 Sobic003G332100--Sobic009G029700 Sobic008G185500 Sobic008G185500 Sobic003G332100--Sobic008G185500 Sobic010G086500 Sobic010G086500 Sobic003G332100--Sobic010G086500 Sobic010G176500 Sobic010G176500 Sobic003G332100--Sobic010G176500 Sobic004G126000--Sobic004G340400 Sobic010G007100 Sobic010G007100 Sobic004G126000--Sobic010G007100 Sobic001G145400 Sobic001G145400 Sobic004G126000--Sobic001G145400 Sobic001G355200 Sobic001G355200 Sobic004G126000--Sobic001G355200 Sobic008G185800 Sobic008G185800 Sobic004G126000--Sobic008G185800 Sobic002G279800 Sobic002G279800 Sobic004G126000--Sobic002G279800 Sobic010G059500 Sobic010G059500 Sobic004G126000--Sobic010G059500 Sobic003G042400 Sobic003G042400 Sobic004G126000--Sobic003G042400 Sobic004G320500 Sobic004G320500 Sobic004G126000--Sobic004G320500 Sobic008G135200 Sobic008G135200 Sobic009G045900--Sobic008G135200 Sobic002G047000 Sobic002G047000 Sobic009G045900--Sobic002G047000 Sobic002G246700 Sobic002G246700 Sobic009G045900--Sobic002G246700 Sobic009G045900--Sobic002G408900 Sobic001G090100 Sobic001G090100 Sobic009G045900--Sobic001G090100 Sobic003G314700 Sobic003G314700 Sobic009G045900--Sobic003G314700 Sobic010G206300 Sobic010G206300 Sobic009G045900--Sobic010G206300 Sobic001G248100 Sobic001G248100 Sobic009G045900--Sobic001G248100 Sobic001G537500 Sobic001G537500 Sobic009G045900--Sobic001G537500 Sobic008G038600 Sobic008G038600 Sobic002G317100--Sobic008G038600 Sobic006G128400 Sobic006G128400 Sobic002G317100--Sobic006G128400 Sobic001G393900 Sobic001G393900 Sobic002G317100--Sobic001G393900 Sobic002G155000 Sobic002G155000 Sobic002G317100--Sobic002G155000 Sobic003G308500 Sobic003G308500 Sobic002G317100--Sobic003G308500 Sobic010G115400 Sobic010G115400 Sobic002G317100--Sobic010G115400 Sobic002G317100--Sobic006G193300 Sobic006G269800 Sobic006G269800 Sobic002G317100--Sobic006G269800 Sobic001G178300 Sobic001G178300 Sobic002G317100--Sobic001G178300 Sobic008G118500 Sobic008G118500 Sobic001G178400--Sobic008G118500 Sobic001G291800 Sobic001G291800 Sobic001G178400--Sobic001G291800 Sobic009G102900 Sobic009G102900 Sobic001G178400--Sobic009G102900 Sobic001G007800 Sobic001G007800 Sobic001G178400--Sobic001G007800 Sobic001G469200 Sobic001G469200 Sobic001G178400--Sobic001G469200 Sobic001G455800 Sobic001G455800 Sobic001G178400--Sobic001G455800 Sobic004G307500 Sobic004G307500 Sobic001G178400--Sobic004G307500 Sobic002G365900 Sobic002G365900 Sobic001G178400--Sobic002G365900 Sobic008G160000 Sobic008G160000 Sobic001G178400--Sobic008G160000 Sobic004G340400--Sobic001G145400 Sobic004G340400--Sobic001G291800 Sobic004G340400--Sobic004G320500 Sobic004G340400--Sobic010G007100 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic004G340400--Sobic001G401500 Sobic001G460500 Sobic001G460500 Sobic010G081700--Sobic001G460500 Sobic004G348600 Sobic004G348600 Sobic010G081700--Sobic004G348600 Sobic004G208500 Sobic004G208500 Sobic010G081700--Sobic004G208500 Sobic004G322300 Sobic004G322300 Sobic010G081700--Sobic004G322300 Sobic002G398700 Sobic002G398700 Sobic010G081700--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic010G081700--Sobic006G106300 Sobic010G081700--Sobic002G408900 Sobic004G356200 Sobic004G356200 Sobic010G081700--Sobic004G356200 Sobic002G150700 Sobic002G150700 Sobic010G081700--Sobic002G150700
Octagon: transcription factors


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