Gene annotation
Transcriptome id Sobic.007G011800.1,Sobic.007G011800.2
Synonym Sb07g001150
Functional annotation -
UniProt C5YLX3 , C5YLX5
Pfam -
Panther DB PTHR11208 PTHR11208:SF52
NCBI CDD KOG0119; Splicing factor 1/branch point binding protein (RRM superfamily)
KEGG Orthology K13095; splicing factor 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G32940 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os08g01070.2,LOC_Os08g01070.4 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G011800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G207300 DNA ligase I, ATP-dependent family protein, expressed K10777: LIG4, DNA ligase 4
2 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
3 Sobic.003G416700 homeobox domain containing protein, expressed -
4 Sobic.003G212900 zinc ion binding protein, putative, expressed -
5 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
6 Sobic.006G224800 expressed protein -
7 Sobic.001G542450 - -
8 Sobic.002G154000 EDM2, putative, expressed -
9 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
10 Sobic.003G043000 expressed protein -
11 Sobic.005G200800 homeobox domain containing protein, expressed -
12 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
13 Sobic.002G422100 EMB1011, putative, expressed K14317: NUP214, nuclear pore complex protein Nup214
14 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
15 Sobic.004G357100 expressed protein -
16 Sobic.003G152400 WD domain containing protein, putative, expressed K17601: WD repeat-containing protein 81
17 Sobic.009G045200 double-stranded RNA binding motif containing protein, expressed -
18 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
19 Sobic.007G183900 ubiquitin family protein, putative, expressed -
20 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1


Gene co-expression network
sample Sobic007G011800 Sobic007G011800 Sobic006G207300 Sobic006G207300 Sobic007G011800--Sobic006G207300 Sobic003G062300 Sobic003G062300 Sobic007G011800--Sobic003G062300 Sobic003G416700 Sobic003G416700 Sobic007G011800--Sobic003G416700 Sobic003G212900 Sobic003G212900 Sobic007G011800--Sobic003G212900 Sobic002G145800 Sobic002G145800 Sobic007G011800--Sobic002G145800 Sobic006G224800 Sobic006G224800 Sobic007G011800--Sobic006G224800 Sobic001G542450 Sobic001G542450 Sobic007G011800--Sobic001G542450 Sobic002G154000 Sobic002G154000 Sobic007G011800--Sobic002G154000 Sobic001G461400 Sobic001G461400 Sobic007G011800--Sobic001G461400 Sobic006G180700 Sobic006G180700 Sobic006G207300--Sobic006G180700 Sobic009G045200 Sobic009G045200 Sobic006G207300--Sobic009G045200 Sobic001G088900 Sobic001G088900 Sobic006G207300--Sobic001G088900 Sobic010G279900 Sobic010G279900 Sobic006G207300--Sobic010G279900 Sobic006G131200 Sobic006G131200 Sobic006G207300--Sobic006G131200 Sobic006G207300--Sobic007G011800 Sobic004G086200 Sobic004G086200 Sobic006G207300--Sobic004G086200 Sobic001G222000 Sobic001G222000 Sobic006G207300--Sobic001G222000 Sobic001G245900 Sobic001G245900 Sobic006G207300--Sobic001G245900 Sobic003G062300--Sobic006G224800 Sobic004G309900 Sobic004G309900 Sobic003G062300--Sobic004G309900 Sobic003G062300--Sobic002G145800 Sobic003G062300--Sobic003G416700 Sobic005G220000 Sobic005G220000 Sobic003G062300--Sobic005G220000 Sobic001G051700 Sobic001G051700 Sobic003G062300--Sobic001G051700 Sobic002G164200 Sobic002G164200 Sobic003G062300--Sobic002G164200 Sobic003G214600 Sobic003G214600 Sobic003G062300--Sobic003G214600 Sobic007G183300 Sobic007G183300 Sobic003G062300--Sobic007G183300 Sobic003G416700--Sobic002G154000 Sobic002G264200 Sobic002G264200 Sobic003G416700--Sobic002G264200 Sobic003G416700--Sobic001G461400 Sobic007G183900 Sobic007G183900 Sobic003G416700--Sobic007G183900 Sobic003G416700--Sobic001G051700 Sobic003G360400 Sobic003G360400 Sobic003G416700--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic003G416700--Sobic009G119000 Sobic001G063700 Sobic001G063700 Sobic003G416700--Sobic001G063700 Sobic010G275500 Sobic010G275500 Sobic003G416700--Sobic010G275500 Sobic001G135500 Sobic001G135500 Sobic003G212900--Sobic001G135500 Sobic010G077500 Sobic010G077500 Sobic003G212900--Sobic010G077500 Sobic002G422100 Sobic002G422100 Sobic003G212900--Sobic002G422100 Sobic003G212900--Sobic003G416700 Sobic001G042200 Sobic001G042200 Sobic003G212900--Sobic001G042200 Sobic003G212900--Sobic004G309900 Sobic003G212900--Sobic006G224800 Sobic008G058800 Sobic008G058800 Sobic003G212900--Sobic008G058800 Sobic002G295500 Sobic002G295500 Sobic003G212900--Sobic002G295500 Sobic006G269800 Sobic006G269800 Sobic002G145800--Sobic006G269800 Sobic002G145800--Sobic003G416700 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic002G145800--Sobic001G051700 Sobic002G145800--Sobic003G062300 Sobic008G147200 Sobic008G147200 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic006G224800--Sobic003G062300 Sobic006G224800--Sobic003G416700 Sobic006G166200 Sobic006G166200 Sobic006G224800--Sobic006G166200 Sobic003G189600 Sobic003G189600 Sobic006G224800--Sobic003G189600 Sobic004G053500 Sobic004G053500 Sobic006G224800--Sobic004G053500 Sobic009G249700 Sobic009G249700 Sobic006G224800--Sobic009G249700 Sobic004G051200 Sobic004G051200 Sobic006G224800--Sobic004G051200 Sobic006G224800--Sobic002G295500 Sobic002G430300 Sobic002G430300 Sobic006G224800--Sobic002G430300 Sobic008G002300 Sobic008G002300 Sobic001G542450--Sobic008G002300 Sobic001G542450--Sobic003G416700 Sobic001G542450--Sobic002G145800 Sobic003G217200 Sobic003G217200 Sobic001G542450--Sobic003G217200 Sobic001G542450--Sobic003G062300 Sobic001G542450--Sobic006G224800 Sobic001G542450--Sobic002G295500 Sobic001G542450--Sobic001G461400 Sobic001G542450--Sobic006G166200 Sobic002G154000--Sobic003G360400 Sobic002G154000--Sobic003G416700 Sobic010G112100 Sobic010G112100 Sobic002G154000--Sobic010G112100 Sobic002G154000--Sobic001G063700 Sobic010G001100 Sobic010G001100 Sobic002G154000--Sobic010G001100 Sobic002G154000--Sobic001G461400 Sobic001G433800 Sobic001G433800 Sobic002G154000--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic002G154000--Sobic004G048800 Sobic007G063000 Sobic007G063000 Sobic002G154000--Sobic007G063000 Sobic001G461400--Sobic001G063700 Sobic001G461400--Sobic003G416700 Sobic001G461400--Sobic002G264200 Sobic001G461400--Sobic002G154000 Sobic001G461400--Sobic001G087600 Sobic005G200800 Sobic005G200800 Sobic001G461400--Sobic005G200800 Sobic001G461400--Sobic003G360400 Sobic002G071500 Sobic002G071500 Sobic001G461400--Sobic002G071500 Sobic001G461400--Sobic010G112100
Octagon: transcription factors


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