Gene annotation
Transcriptome id Sobic.006G207300.1
Synonym ATLIG4, Sb06g027820, LIG4
Functional annotation DNA ligase I, ATP-dependent family protein, expressed
UniProt A0A1Z5REU4
Pfam PF11411 PF00533 PF04679 PF04675 PF01068
Panther DB PTHR10459 PTHR10459:SF72
NCBI CDD -
KEGG Orthology K10777; LIG4, DNA ligase 4
Gene Ontology GO:0003910; DNA ligase (ATP) activity GO:0006310DNA recombination GO:0006281DNA repair GO:0003677DNA binding GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G57160 : DNA ligase IV
RAP-DB (Rice) LOC_Os04g51700.1 : DNA ligase I, ATP-dependent family protein, expressed
MaizeGDB (Corn) Zm00025a009878
Brachypodium KQJ84446 , KQJ84445
Barley HORVU2Hr1G100740.18 , HORVU2Hr1G100740.1 , HORVU2Hr1G100740.2 , HORVU2Hr1G100740.3 , HORVU2Hr1G100740.4 , HORVU2Hr1G100740.5 , HORVU2Hr1G100740.6 , HORVU2Hr1G100740.7 , HORVU2Hr1G100740.9 , HORVU2Hr1G100740.23 , HORVU2Hr1G100740.22 , HORVU2Hr1G100740.21 , HORVU2Hr1G100740.20 , HORVU2Hr1G100740.27 , HORVU2Hr1G100740.26 , HORVU2Hr1G100740.25 , HORVU2Hr1G100740.24 , HORVU2Hr1G100740.29 , HORVU2Hr1G100740.28 , HORVU2Hr1G100740.15 , HORVU2Hr1G100740.19 , HORVU2Hr1G100740.12 , HORVU2Hr1G100740.13 , HORVU2Hr1G100740.10 , HORVU2Hr1G100740.11 , HORVU2Hr1G100740.16 , HORVU2Hr1G100740.17 , HORVU2Hr1G100740.14
Wheat TraesCS2D02G429800 , TraesCS2D02G429800 , TraesCS2B02G453300 , TraesCS2A02G431800
Populus -


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cDNA sequences
Sobic.006G207300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
2 Sobic.009G045200 double-stranded RNA binding motif containing protein, expressed -
3 Sobic.001G088900 serine/threonine-protein kinase TOUSLED, putative, expressed K08864: tousled-like kinase
4 Sobic.010G279900 PHD-finger domain containing protein, expressed -
5 Sobic.006G131200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03018: RPC1, DNA-directed RNA polymerase III subunit RPC1
6 Sobic.007G011800 - K13095: splicing factor 1
7 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
8 Sobic.001G222000 WD domain, G-beta repeat domain containing protein, expressed -
9 Sobic.001G245900 expressed protein -
10 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
11 Sobic.001G393700 expressed protein -
12 Sobic.003G074200 actin, putative, expressed K11672: ACTR5, ARP5, actin-related protein 5
13 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
14 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
15 Sobic.009G000400 expressed protein -
16 Sobic.004G020900 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
17 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
18 Sobic.009G126000 mannosylglycoprotein endo-beta-mannosidase, putative, expressed K18577: mannosylglycoprotein endo-beta-mannosidase
19 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
20 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -


Gene co-expression network
sample Sobic006G207300 Sobic006G207300 Sobic006G180700 Sobic006G180700 Sobic006G207300--Sobic006G180700 Sobic009G045200 Sobic009G045200 Sobic006G207300--Sobic009G045200 Sobic001G088900 Sobic001G088900 Sobic006G207300--Sobic001G088900 Sobic010G279900 Sobic010G279900 Sobic006G207300--Sobic010G279900 Sobic006G131200 Sobic006G131200 Sobic006G207300--Sobic006G131200 Sobic007G011800 Sobic007G011800 Sobic006G207300--Sobic007G011800 Sobic004G086200 Sobic004G086200 Sobic006G207300--Sobic004G086200 Sobic001G222000 Sobic001G222000 Sobic006G207300--Sobic001G222000 Sobic001G245900 Sobic001G245900 Sobic006G207300--Sobic001G245900 Sobic009G074700 Sobic009G074700 Sobic006G180700--Sobic009G074700 Sobic001G085700 Sobic001G085700 Sobic006G180700--Sobic001G085700 Sobic006G138000 Sobic006G138000 Sobic006G180700--Sobic006G138000 Sobic009G040800 Sobic009G040800 Sobic006G180700--Sobic009G040800 Sobic009G000400 Sobic009G000400 Sobic006G180700--Sobic009G000400 Sobic001G335900 Sobic001G335900 Sobic006G180700--Sobic001G335900 Sobic006G180700--Sobic009G045200 Sobic006G091000 Sobic006G091000 Sobic006G180700--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic006G180700--Sobic005G040900 Sobic001G051700 Sobic001G051700 Sobic009G045200--Sobic001G051700 Sobic003G416700 Sobic003G416700 Sobic009G045200--Sobic003G416700 Sobic001G393700 Sobic001G393700 Sobic009G045200--Sobic001G393700 Sobic006G224800 Sobic006G224800 Sobic009G045200--Sobic006G224800 Sobic010G099800 Sobic010G099800 Sobic009G045200--Sobic010G099800 Sobic007G187600 Sobic007G187600 Sobic009G045200--Sobic007G187600 Sobic002G430300 Sobic002G430300 Sobic009G045200--Sobic002G430300 Sobic009G045200--Sobic006G180700 Sobic009G045200--Sobic001G335900 Sobic001G088900--Sobic010G279900 Sobic001G088900--Sobic001G245900 Sobic001G367100 Sobic001G367100 Sobic001G088900--Sobic001G367100 Sobic001G088900--Sobic006G180700 Sobic001G088900--Sobic009G000400 Sobic001G034500 Sobic001G034500 Sobic001G088900--Sobic001G034500 Sobic010G269300 Sobic010G269300 Sobic001G088900--Sobic010G269300 Sobic001G088900--Sobic001G222000 Sobic001G261585 Sobic001G261585 Sobic001G088900--Sobic001G261585 Sobic004G156500 Sobic004G156500 Sobic010G279900--Sobic004G156500 Sobic007G183300 Sobic007G183300 Sobic010G279900--Sobic007G183300 Sobic010G279900--Sobic004G086200 Sobic010G279900--Sobic001G367100 Sobic007G027700 Sobic007G027700 Sobic010G279900--Sobic007G027700 Sobic003G409200 Sobic003G409200 Sobic010G279900--Sobic003G409200 Sobic003G253400 Sobic003G253400 Sobic010G279900--Sobic003G253400 Sobic010G279900--Sobic003G416700 Sobic008G100100 Sobic008G100100 Sobic010G279900--Sobic008G100100 Sobic003G042400 Sobic003G042400 Sobic006G131200--Sobic003G042400 Sobic006G131200--Sobic009G074700 Sobic001G246500 Sobic001G246500 Sobic006G131200--Sobic001G246500 Sobic006G131200--Sobic004G086200 Sobic010G278600 Sobic010G278600 Sobic006G131200--Sobic010G278600 Sobic002G079100 Sobic002G079100 Sobic006G131200--Sobic002G079100 Sobic001G346900 Sobic001G346900 Sobic006G131200--Sobic001G346900 Sobic006G131200--Sobic009G040800 Sobic006G131200--Sobic006G180700 Sobic007G011800--Sobic006G207300 Sobic003G062300 Sobic003G062300 Sobic007G011800--Sobic003G062300 Sobic007G011800--Sobic003G416700 Sobic003G212900 Sobic003G212900 Sobic007G011800--Sobic003G212900 Sobic002G145800 Sobic002G145800 Sobic007G011800--Sobic002G145800 Sobic007G011800--Sobic006G224800 Sobic001G542450 Sobic001G542450 Sobic007G011800--Sobic001G542450 Sobic002G154000 Sobic002G154000 Sobic007G011800--Sobic002G154000 Sobic001G461400 Sobic001G461400 Sobic007G011800--Sobic001G461400 Sobic004G086200--Sobic001G346900 Sobic004G285000 Sobic004G285000 Sobic004G086200--Sobic004G285000 Sobic001G134300 Sobic001G134300 Sobic004G086200--Sobic001G134300 Sobic004G086200--Sobic001G245900 Sobic001G306900 Sobic001G306900 Sobic004G086200--Sobic001G306900 Sobic010G096000 Sobic010G096000 Sobic004G086200--Sobic010G096000 Sobic004G086200--Sobic010G279900 Sobic004G086200--Sobic001G246500 Sobic010G065300 Sobic010G065300 Sobic004G086200--Sobic010G065300 Sobic001G373000 Sobic001G373000 Sobic001G222000--Sobic001G373000 Sobic001G135500 Sobic001G135500 Sobic001G222000--Sobic001G135500 Sobic001G023800 Sobic001G023800 Sobic001G222000--Sobic001G023800 Sobic001G222000--Sobic001G393700 Sobic007G168300 Sobic007G168300 Sobic001G222000--Sobic007G168300 Sobic008G057000 Sobic008G057000 Sobic001G222000--Sobic008G057000 Sobic003G074200 Sobic003G074200 Sobic001G222000--Sobic003G074200 Sobic001G355200 Sobic001G355200 Sobic001G222000--Sobic001G355200 Sobic009G032200 Sobic009G032200 Sobic001G222000--Sobic009G032200 Sobic001G245900--Sobic004G086200 Sobic001G245900--Sobic001G367100 Sobic001G245900--Sobic010G279900 Sobic001G245900--Sobic001G346900 Sobic001G245900--Sobic008G057000 Sobic001G245900--Sobic003G409200 Sobic001G245900--Sobic001G134300 Sobic001G245900--Sobic001G088900 Sobic001G245900--Sobic006G138000
Octagon: transcription factors


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