Gene annotation
Transcriptome id Sobic.007G050100.1
Synonym LOL1, Sb07g004050
Functional annotation LSD1 zinc finger domain containing protein, expressed
UniProt C5YHD0
Pfam PF06943
Panther DB PTHR31747 PTHR31747:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32540 : lsd one like 1
RAP-DB (Rice) LOC_Os08g06280.3 : LSD1 zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a030062
Brachypodium KQJ95307 , KQJ95306 , KQJ95305 , KQJ95309 , KQJ95308
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G050100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G039600 -(PubMedID : 26465154)@expressed protein -
2 Sobic.005G030500 OsRR10 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
3 Sobic.003G378050 - -
4 Sobic.009G244300 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
5 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
6 Sobic.004G071800 - -
7 Sobic.009G243500 polygalacturonase, putative, expressed -
8 Sobic.008G038300 uncharacterized protein ycf53, putative, expressed -
9 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
10 Sobic.010G109500 expressed protein -
11 Sobic.010G127200 lectin-like receptor kinase 7, putative, expressed -
12 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
13 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
15 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.001G068400 - -
17 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
18 Sobic.003G131000 expressed protein -
19 Sobic.003G199800 expressed protein -
20 Sobic.009G244600 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic007G050100 Sobic007G050100 Sobic005G039600 Sobic005G039600 Sobic007G050100--Sobic005G039600 Sobic005G030500 Sobic005G030500 Sobic007G050100--Sobic005G030500 Sobic003G378050 Sobic003G378050 Sobic007G050100--Sobic003G378050 Sobic009G244300 Sobic009G244300 Sobic007G050100--Sobic009G244300 Sobic003G231800 Sobic003G231800 Sobic007G050100--Sobic003G231800 Sobic004G071800 Sobic004G071800 Sobic007G050100--Sobic004G071800 Sobic009G243500 Sobic009G243500 Sobic007G050100--Sobic009G243500 Sobic008G038300 Sobic008G038300 Sobic007G050100--Sobic008G038300 Sobic003G209800 Sobic003G209800 Sobic007G050100--Sobic003G209800 Sobic001G520800 Sobic001G520800 Sobic005G039600--Sobic001G520800 Sobic007G034300 Sobic007G034300 Sobic005G039600--Sobic007G034300 Sobic003G199800 Sobic003G199800 Sobic005G039600--Sobic003G199800 Sobic003G310400 Sobic003G310400 Sobic005G039600--Sobic003G310400 Sobic005G039600--Sobic003G231800 Sobic003G431900 Sobic003G431900 Sobic005G039600--Sobic003G431900 Sobic005G039600--Sobic009G244300 Sobic004G035500 Sobic004G035500 Sobic005G039600--Sobic004G035500 Sobic005G039600--Sobic005G030500 Sobic005G030500--Sobic005G039600 Sobic003G237600 Sobic003G237600 Sobic005G030500--Sobic003G237600 Sobic008G081200 Sobic008G081200 Sobic005G030500--Sobic008G081200 Sobic002G213000 Sobic002G213000 Sobic005G030500--Sobic002G213000 Sobic007G189700 Sobic007G189700 Sobic005G030500--Sobic007G189700 Sobic001G189100 Sobic001G189100 Sobic005G030500--Sobic001G189100 Sobic009G254600 Sobic009G254600 Sobic005G030500--Sobic009G254600 Sobic003G036100 Sobic003G036100 Sobic005G030500--Sobic003G036100 Sobic005G165500 Sobic005G165500 Sobic003G378050--Sobic005G165500 Sobic006G147300 Sobic006G147300 Sobic003G378050--Sobic006G147300 Sobic003G378050--Sobic009G244300 Sobic003G378050--Sobic007G034300 Sobic010G249400 Sobic010G249400 Sobic003G378050--Sobic010G249400 Sobic004G305800 Sobic004G305800 Sobic003G378050--Sobic004G305800 Sobic003G378050--Sobic003G431900 Sobic003G256700 Sobic003G256700 Sobic003G378050--Sobic003G256700 Sobic003G378050--Sobic003G231800 Sobic009G244300--Sobic003G231800 Sobic004G267000 Sobic004G267000 Sobic009G244300--Sobic004G267000 Sobic009G244600 Sobic009G244600 Sobic009G244300--Sobic009G244600 Sobic009G244300--Sobic007G034300 Sobic003G241900 Sobic003G241900 Sobic009G244300--Sobic003G241900 Sobic009G244300--Sobic001G520800 Sobic009G244300--Sobic004G305800 Sobic008G104601 Sobic008G104601 Sobic009G244300--Sobic008G104601 Sobic009G244300--Sobic003G199800 Sobic003G231800--Sobic009G244300 Sobic003G231800--Sobic009G244600 Sobic003G231800--Sobic004G267000 Sobic010G183100 Sobic010G183100 Sobic003G231800--Sobic010G183100 Sobic003G231800--Sobic007G034300 Sobic003G231800--Sobic001G520800 Sobic006G006700 Sobic006G006700 Sobic003G231800--Sobic006G006700 Sobic003G231800--Sobic009G254600 Sobic003G235500 Sobic003G235500 Sobic003G231800--Sobic003G235500 Sobic001G274600 Sobic001G274600 Sobic004G071800--Sobic001G274600 Sobic004G071800--Sobic003G209800 Sobic004G272600 Sobic004G272600 Sobic004G071800--Sobic004G272600 Sobic003G052500 Sobic003G052500 Sobic004G071800--Sobic003G052500 Sobic004G071800--Sobic008G038300 Sobic006G073500 Sobic006G073500 Sobic004G071800--Sobic006G073500 Sobic002G064000 Sobic002G064000 Sobic004G071800--Sobic002G064000 Sobic002G033900 Sobic002G033900 Sobic004G071800--Sobic002G033900 Sobic001G070500 Sobic001G070500 Sobic004G071800--Sobic001G070500 Sobic002G040100 Sobic002G040100 Sobic009G243500--Sobic002G040100 Sobic006G011100 Sobic006G011100 Sobic009G243500--Sobic006G011100 Sobic009G243500--Sobic008G038300 Sobic002G000500 Sobic002G000500 Sobic009G243500--Sobic002G000500 Sobic010G109500 Sobic010G109500 Sobic009G243500--Sobic010G109500 Sobic009G243500--Sobic001G274600 Sobic010G276400 Sobic010G276400 Sobic009G243500--Sobic010G276400 Sobic001G068400 Sobic001G068400 Sobic009G243500--Sobic001G068400 Sobic009G243500--Sobic003G209800 Sobic008G038300--Sobic002G040100 Sobic008G038300--Sobic001G274600 Sobic010G183032 Sobic010G183032 Sobic008G038300--Sobic010G183032 Sobic008G038300--Sobic003G209800 Sobic010G108401 Sobic010G108401 Sobic008G038300--Sobic010G108401 Sobic008G038300--Sobic002G000500 Sobic009G191300 Sobic009G191300 Sobic008G038300--Sobic009G191300 Sobic008G038300--Sobic004G071800 Sobic008G038300--Sobic003G199800 Sobic003G209800--Sobic003G052500 Sobic003G209800--Sobic010G109500 Sobic003G209800--Sobic001G274600 Sobic003G209800--Sobic006G011100 Sobic003G209800--Sobic008G038300 Sobic006G234100 Sobic006G234100 Sobic003G209800--Sobic006G234100 Sobic006G105900 Sobic006G105900 Sobic003G209800--Sobic006G105900 Sobic003G209800--Sobic004G071800 Sobic003G209800--Sobic002G000500
Octagon: transcription factors


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