Gene annotation
Transcriptome id Sobic.007G147600.1
Synonym Sb07g022190, SbSAUR55, small auxin up RNA
Functional annotation "domain confirmed by Pfam database, expression not supported" (PubMedID : 20499123)
OsSAUR33 - Auxin-responsive SAUR gene family member, expressed
UniProt C5YLS9
Pfam PF02519
Panther DB PTHR31374 PTHR31374:SF52
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009733; response to auxin


Orthologs (automatic annotation)
TAIR AT5G20820 : SAUR-like auxin-responsive protein family
RAP-DB (Rice) LOC_Os08g35110.1 : OsSAUR33 - Auxin-responsive SAUR gene family member, expressed
MaizeGDB (Corn) Zm00025a030735 , Zm00025a005774 , Zm00025a005775 , Zm00025a047127 , Zm00025a005772 , Zm00025a013961
Brachypodium KQJ98532
Barley HORVU5Hr1G062720.2 , HORVU5Hr1G062720.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G147600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G174650 - K08064: NFYA, nuclear transcription factor Y, alpha
2 Sobic.007G147700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
3 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
4 Sobic.009G152600 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
5 Sobic.009G189501 - -
6 Sobic.008G118700 respiratory burst oxidase, putative, expressed -
7 Sobic.004G171400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.004G306300 expressed protein -
9 Sobic.002G393400 chaperonin, putative, expressed K04078: groES, chaperonin GroES
10 Sobic.002G250000 Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed -
11 Sobic.007G006300 expressed protein -
12 Sobic.003G146400 anther-specific protein SF18 precursor, putative, expressed -
13 Sobic.001G031700 nucleobase-ascorbate transporter, putative, expressed -
14 Sobic.001G397300 Up-reguralion under heat(PubMedID : 24916767)@expressed protein -
15 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
16 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
17 Sobic.009G216800 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
18 Sobic.001G195200 cytochrome P450, putative, expressed -
19 Sobic.004G086400 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
20 Sobic.007G178000 heat shock protein DnaJ, putative, expressed -


Gene co-expression network
sample Sobic007G147600 Sobic007G147600 Sobic008G174650 Sobic008G174650 Sobic007G147600--Sobic008G174650 Sobic007G147700 Sobic007G147700 Sobic007G147600--Sobic007G147700 Sobic003G377100 Sobic003G377100 Sobic007G147600--Sobic003G377100 Sobic009G152600 Sobic009G152600 Sobic007G147600--Sobic009G152600 Sobic009G189501 Sobic009G189501 Sobic007G147600--Sobic009G189501 Sobic008G118700 Sobic008G118700 Sobic007G147600--Sobic008G118700 Sobic004G171400 Sobic004G171400 Sobic007G147600--Sobic004G171400 Sobic004G306300 Sobic004G306300 Sobic007G147600--Sobic004G306300 Sobic002G393400 Sobic002G393400 Sobic007G147600--Sobic002G393400 Sobic004G171700 Sobic004G171700 Sobic008G174650--Sobic004G171700 Sobic002G234400 Sobic002G234400 Sobic008G174650--Sobic002G234400 Sobic001G487500 Sobic001G487500 Sobic008G174650--Sobic001G487500 Sobic001G190100 Sobic001G190100 Sobic008G174650--Sobic001G190100 Sobic004G229400 Sobic004G229400 Sobic008G174650--Sobic004G229400 Sobic006G187900 Sobic006G187900 Sobic008G174650--Sobic006G187900 Sobic004G229500 Sobic004G229500 Sobic008G174650--Sobic004G229500 Sobic009G183900 Sobic009G183900 Sobic008G174650--Sobic009G183900 Sobic010G064000 Sobic010G064000 Sobic008G174650--Sobic010G064000 Sobic010G198500 Sobic010G198500 Sobic007G147700--Sobic010G198500 Sobic003G197200 Sobic003G197200 Sobic007G147700--Sobic003G197200 Sobic001G201200 Sobic001G201200 Sobic007G147700--Sobic001G201200 Sobic001G443800 Sobic001G443800 Sobic007G147700--Sobic001G443800 Sobic007G214600 Sobic007G214600 Sobic007G147700--Sobic007G214600 Sobic001G105900 Sobic001G105900 Sobic007G147700--Sobic001G105900 Sobic001G481300 Sobic001G481300 Sobic007G147700--Sobic001G481300 Sobic003G355100 Sobic003G355100 Sobic007G147700--Sobic003G355100 Sobic001G279350 Sobic001G279350 Sobic007G147700--Sobic001G279350 Sobic003G148600 Sobic003G148600 Sobic003G377100--Sobic003G148600 Sobic002G068600 Sobic002G068600 Sobic003G377100--Sobic002G068600 Sobic003G086600 Sobic003G086600 Sobic003G377100--Sobic003G086600 Sobic001G405500 Sobic001G405500 Sobic003G377100--Sobic001G405500 Sobic003G377100--Sobic008G118700 Sobic004G166200 Sobic004G166200 Sobic003G377100--Sobic004G166200 Sobic003G377100--Sobic003G355100 Sobic001G108200 Sobic001G108200 Sobic003G377100--Sobic001G108200 Sobic003G377100--Sobic003G197200 Sobic003G353300 Sobic003G353300 Sobic009G152600--Sobic003G353300 Sobic009G021600 Sobic009G021600 Sobic009G152600--Sobic009G021600 Sobic008G186100 Sobic008G186100 Sobic009G152600--Sobic008G186100 Sobic003G393900 Sobic003G393900 Sobic009G152600--Sobic003G393900 Sobic009G152600--Sobic003G086600 Sobic009G152600--Sobic008G118700 Sobic001G031700 Sobic001G031700 Sobic009G152600--Sobic001G031700 Sobic009G152600--Sobic003G377100 Sobic009G152600--Sobic001G405500 Sobic004G004500 Sobic004G004500 Sobic009G189501--Sobic004G004500 Sobic001G391500 Sobic001G391500 Sobic009G189501--Sobic001G391500 Sobic001G459800 Sobic001G459800 Sobic009G189501--Sobic001G459800 Sobic002G339000 Sobic002G339000 Sobic009G189501--Sobic002G339000 Sobic009G189501--Sobic007G214600 Sobic001G397300 Sobic001G397300 Sobic009G189501--Sobic001G397300 Sobic007G036900 Sobic007G036900 Sobic009G189501--Sobic007G036900 Sobic004G141200 Sobic004G141200 Sobic009G189501--Sobic004G141200 Sobic009G189501--Sobic003G355100 Sobic008G118700--Sobic003G377100 Sobic008G118700--Sobic002G068600 Sobic001G107800 Sobic001G107800 Sobic008G118700--Sobic001G107800 Sobic008G118700--Sobic001G201200 Sobic001G254100 Sobic001G254100 Sobic008G118700--Sobic001G254100 Sobic001G149800 Sobic001G149800 Sobic008G118700--Sobic001G149800 Sobic001G371800 Sobic001G371800 Sobic008G118700--Sobic001G371800 Sobic008G118700--Sobic003G148600 Sobic008G118700--Sobic003G353300 Sobic005G011300 Sobic005G011300 Sobic004G171400--Sobic005G011300 Sobic004G171400--Sobic003G393900 Sobic004G171400--Sobic004G141200 Sobic001G140900 Sobic001G140900 Sobic004G171400--Sobic001G140900 Sobic004G100700 Sobic004G100700 Sobic004G171400--Sobic004G100700 Sobic003G228900 Sobic003G228900 Sobic004G171400--Sobic003G228900 Sobic004G171400--Sobic001G459800 Sobic002G188900 Sobic002G188900 Sobic004G171400--Sobic002G188900 Sobic003G369100 Sobic003G369100 Sobic004G171400--Sobic003G369100 Sobic004G065500 Sobic004G065500 Sobic004G306300--Sobic004G065500 Sobic004G306300--Sobic001G459800 Sobic004G306300--Sobic003G393900 Sobic001G138600 Sobic001G138600 Sobic004G306300--Sobic001G138600 Sobic004G306300--Sobic003G369100 Sobic004G321300 Sobic004G321300 Sobic004G306300--Sobic004G321300 Sobic006G267200 Sobic006G267200 Sobic004G306300--Sobic006G267200 Sobic004G306300--Sobic004G141200 Sobic001G055600 Sobic001G055600 Sobic004G306300--Sobic001G055600 Sobic002G393400--Sobic003G393900 Sobic009G054800 Sobic009G054800 Sobic002G393400--Sobic009G054800 Sobic002G372400 Sobic002G372400 Sobic002G393400--Sobic002G372400 Sobic002G393400--Sobic004G065500 Sobic005G113300 Sobic005G113300 Sobic002G393400--Sobic005G113300 Sobic010G230700 Sobic010G230700 Sobic002G393400--Sobic010G230700 Sobic004G280700 Sobic004G280700 Sobic002G393400--Sobic004G280700 Sobic004G008400 Sobic004G008400 Sobic002G393400--Sobic004G008400 Sobic003G037800 Sobic003G037800 Sobic002G393400--Sobic003G037800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.