Gene annotation
Transcriptome id Sobic.007G205700.1
Synonym POM1, ELP, Sb07g027310, HOT2, ERH2, CTL1, ELP1, ATCTL1
Functional annotation CHIT12 - Chitinase family protein precursor, expressed
UniProt C5YIM8
Pfam PF00182
Panther DB PTHR22595 PTHR22595:SF57
NCBI CDD KOG4742; Predicted chitinase
KEGG Orthology -
Gene Ontology GO:0016998; cell wall macromolecule catabolic process GO:0006032chitin catabolic process GO:0004568chitinase activity


Orthologs (automatic annotation)
TAIR AT1G05850 : Chitinase family protein
RAP-DB (Rice) LOC_Os08g41100.1 : CHIT12 - Chitinase family protein precursor, expressed
MaizeGDB (Corn) -
Brachypodium KQJ98973
Barley HORVU7Hr1G051580.2 , HORVU7Hr1G051580.1 , HORVU3Hr1G110050.4 , HORVU3Hr1G110050.1 , HORVU3Hr1G110050.2 , HORVU3Hr1G110050.3
Wheat TraesCS7A02G250400 , TraesCS3A02G415700 , TraesCS7D02G249100 , TraesCS7B02G140700
Populus -


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cDNA sequences
Sobic.007G205700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G022500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
2 Sobic.003G374200 dnaJ domain containing protein, expressed K09519: DnaJ homolog subfamily B member 13
3 Sobic.009G165500 Lung seven transmembrane receptor domain containing protein, putative, expressed -
4 Sobic.002G348000 STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
5 Sobic.001G206000 acyltransferase, putative, expressed K00655: 1-acyl-sn-glycerol-3-phosphate acyltransferase
6 Sobic.002G088700 domain of unknown function domain containing protein, expressed -
7 Sobic.010G224900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
8 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.002G007100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
10 Sobic.001G350501 - K11253: histone H3
11 Sobic.002G254650 - -
12 Sobic.010G007700 "GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants"(PubMedID : 24924234)@cytochrome P450, putative, expressed K04123: ent-kaurenoic acid monooxygenase
13 Sobic.004G349100 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
14 Sobic.010G066300 OsRCI2-8 - Putative low temperature and salt responsive protein, expressed -
15 Sobic.009G252800 expressed protein -
16 Sobic.002G022400 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
17 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
18 Sobic.003G317200 vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed K12184: ESCRT-I complex subunit VPS28
19 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
20 Sobic.001G544100 peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed -


Gene co-expression network
sample Sobic007G205700 Sobic007G205700 Sobic007G022500 Sobic007G022500 Sobic007G205700--Sobic007G022500 Sobic003G374200 Sobic003G374200 Sobic007G205700--Sobic003G374200 Sobic009G165500 Sobic009G165500 Sobic007G205700--Sobic009G165500 Sobic002G348000 Sobic002G348000 Sobic007G205700--Sobic002G348000 Sobic001G206000 Sobic001G206000 Sobic007G205700--Sobic001G206000 Sobic002G088700 Sobic002G088700 Sobic007G205700--Sobic002G088700 Sobic010G224900 Sobic010G224900 Sobic007G205700--Sobic010G224900 Sobic009G065000 Sobic009G065000 Sobic007G205700--Sobic009G065000 Sobic002G007100 Sobic002G007100 Sobic007G205700--Sobic002G007100 Sobic008G094600 Sobic008G094600 Sobic007G022500--Sobic008G094600 Sobic004G032000 Sobic004G032000 Sobic007G022500--Sobic004G032000 Sobic001G517600 Sobic001G517600 Sobic007G022500--Sobic001G517600 Sobic009G191200 Sobic009G191200 Sobic007G022500--Sobic009G191200 Sobic008G098800 Sobic008G098800 Sobic007G022500--Sobic008G098800 Sobic002G044000 Sobic002G044000 Sobic007G022500--Sobic002G044000 Sobic006G108600 Sobic006G108600 Sobic007G022500--Sobic006G108600 Sobic004G137900 Sobic004G137900 Sobic007G022500--Sobic004G137900 Sobic003G358300 Sobic003G358300 Sobic007G022500--Sobic003G358300 Sobic010G066300 Sobic010G066300 Sobic003G374200--Sobic010G066300 Sobic003G374200--Sobic007G205700 Sobic002G254650 Sobic002G254650 Sobic003G374200--Sobic002G254650 Sobic003G374200--Sobic009G165500 Sobic003G374200--Sobic009G065000 Sobic010G214900 Sobic010G214900 Sobic003G374200--Sobic010G214900 Sobic002G427900 Sobic002G427900 Sobic003G374200--Sobic002G427900 Sobic003G374200--Sobic002G088700 Sobic001G225600 Sobic001G225600 Sobic003G374200--Sobic001G225600 Sobic003G084300 Sobic003G084300 Sobic009G165500--Sobic003G084300 Sobic001G505000 Sobic001G505000 Sobic009G165500--Sobic001G505000 Sobic006G149200 Sobic006G149200 Sobic009G165500--Sobic006G149200 Sobic010G238800 Sobic010G238800 Sobic009G165500--Sobic010G238800 Sobic010G054200 Sobic010G054200 Sobic009G165500--Sobic010G054200 Sobic001G429000 Sobic001G429000 Sobic009G165500--Sobic001G429000 Sobic008G135000 Sobic008G135000 Sobic009G165500--Sobic008G135000 Sobic001G412500 Sobic001G412500 Sobic009G165500--Sobic001G412500 Sobic006G201500 Sobic006G201500 Sobic009G165500--Sobic006G201500 Sobic003G356200 Sobic003G356200 Sobic002G348000--Sobic003G356200 Sobic002G272600 Sobic002G272600 Sobic002G348000--Sobic002G272600 Sobic004G349100 Sobic004G349100 Sobic002G348000--Sobic004G349100 Sobic001G350501 Sobic001G350501 Sobic002G348000--Sobic001G350501 Sobic009G164900 Sobic009G164900 Sobic002G348000--Sobic009G164900 Sobic002G348000--Sobic010G224900 Sobic003G024800 Sobic003G024800 Sobic002G348000--Sobic003G024800 Sobic008G142700 Sobic008G142700 Sobic002G348000--Sobic008G142700 Sobic001G427800 Sobic001G427800 Sobic002G348000--Sobic001G427800 Sobic003G116700 Sobic003G116700 Sobic001G206000--Sobic003G116700 Sobic001G149700 Sobic001G149700 Sobic001G206000--Sobic001G149700 Sobic001G206000--Sobic009G065000 Sobic010G055500 Sobic010G055500 Sobic001G206000--Sobic010G055500 Sobic001G281700 Sobic001G281700 Sobic001G206000--Sobic001G281700 Sobic004G231400 Sobic004G231400 Sobic001G206000--Sobic004G231400 Sobic003G317200 Sobic003G317200 Sobic001G206000--Sobic003G317200 Sobic010G071200 Sobic010G071200 Sobic001G206000--Sobic010G071200 Sobic007G079700 Sobic007G079700 Sobic001G206000--Sobic007G079700 Sobic002G088700--Sobic001G281700 Sobic004G083200 Sobic004G083200 Sobic002G088700--Sobic004G083200 Sobic002G088700--Sobic001G206000 Sobic001G390500 Sobic001G390500 Sobic002G088700--Sobic001G390500 Sobic004G077000 Sobic004G077000 Sobic002G088700--Sobic004G077000 Sobic004G152000 Sobic004G152000 Sobic002G088700--Sobic004G152000 Sobic003G248500 Sobic003G248500 Sobic002G088700--Sobic003G248500 Sobic007G115900 Sobic007G115900 Sobic002G088700--Sobic007G115900 Sobic002G088700--Sobic003G024800 Sobic003G151300 Sobic003G151300 Sobic010G224900--Sobic003G151300 Sobic001G107200 Sobic001G107200 Sobic010G224900--Sobic001G107200 Sobic004G006700 Sobic004G006700 Sobic010G224900--Sobic004G006700 Sobic009G026200 Sobic009G026200 Sobic010G224900--Sobic009G026200 Sobic005G211200 Sobic005G211200 Sobic010G224900--Sobic005G211200 Sobic010G224900--Sobic002G348000 Sobic001G215500 Sobic001G215500 Sobic010G224900--Sobic001G215500 Sobic003G128000 Sobic003G128000 Sobic010G224900--Sobic003G128000 Sobic001G069800 Sobic001G069800 Sobic010G224900--Sobic001G069800 Sobic004G164500 Sobic004G164500 Sobic009G065000--Sobic004G164500 Sobic001G311000 Sobic001G311000 Sobic009G065000--Sobic001G311000 Sobic009G065000--Sobic001G206000 Sobic008G106800 Sobic008G106800 Sobic009G065000--Sobic008G106800 Sobic006G257900 Sobic006G257900 Sobic009G065000--Sobic006G257900 Sobic001G471900 Sobic001G471900 Sobic009G065000--Sobic001G471900 Sobic007G177100 Sobic007G177100 Sobic009G065000--Sobic007G177100 Sobic010G228600 Sobic010G228600 Sobic009G065000--Sobic010G228600 Sobic009G065000--Sobic003G116700 Sobic005G157200 Sobic005G157200 Sobic002G007100--Sobic005G157200 Sobic003G025200 Sobic003G025200 Sobic002G007100--Sobic003G025200 Sobic010G029400 Sobic010G029400 Sobic002G007100--Sobic010G029400 Sobic008G058300 Sobic008G058300 Sobic002G007100--Sobic008G058300 Sobic002G406500 Sobic002G406500 Sobic002G007100--Sobic002G406500 Sobic004G196400 Sobic004G196400 Sobic002G007100--Sobic004G196400 Sobic002G007100--Sobic006G201500 Sobic003G280700 Sobic003G280700 Sobic002G007100--Sobic003G280700 Sobic006G081100 Sobic006G081100 Sobic002G007100--Sobic006G081100
Octagon: transcription factors


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