Gene annotation
Transcriptome id Sobic.007G220200.3
Synonym Sb07g028650
Functional annotation harpin-induced protein 1 domain containing protein, expressed
UniProt C5YJB6
Pfam PF03168
Panther DB PTHR31852 PTHR31852:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G26490 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RAP-DB (Rice) LOC_Os08g38580.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004981
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G316300 DUF623 domain containing protein, expressed -
2 Sobic.007G019700 ATCHX, putative, expressed -
3 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
4 Sobic.001G541601 - -
5 Sobic.001G350100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@RING-H2 finger protein ATL5H precursor, putative, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
6 Sobic.008G141600 expressed protein -
7 Sobic.008G139500 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
8 Sobic.004G120500 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
9 Sobic.006G264700 - -
10 Sobic.009G189700 - -
11 Sobic.008G071300 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
12 Sobic.010G052900 expressed protein -
13 Sobic.003G212000 OsCML12 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
14 Sobic.005G144000 glycosyltransferase, putative, expressed -
15 Sobic.001G229100 exostosin family domain containing protein, expressed -
16 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
17 Sobic.001G503600 expressed protein -
18 Sobic.003G187700 polygalacturonase, putative, expressed -
19 Sobic.006G028600 OsSub40 - Putative Subtilisin homologue, expressed -
20 Sobic.003G110932 - -


Gene co-expression network
sample Sobic007G220200 Sobic007G220200 Sobic001G316300 Sobic001G316300 Sobic007G220200--Sobic001G316300 Sobic007G019700 Sobic007G019700 Sobic007G220200--Sobic007G019700 Sobic003G137600 Sobic003G137600 Sobic007G220200--Sobic003G137600 Sobic001G541601 Sobic001G541601 Sobic007G220200--Sobic001G541601 Sobic001G350100 Sobic001G350100 Sobic007G220200--Sobic001G350100 Sobic008G141600 Sobic008G141600 Sobic007G220200--Sobic008G141600 Sobic008G139500 Sobic008G139500 Sobic007G220200--Sobic008G139500 Sobic004G120500 Sobic004G120500 Sobic007G220200--Sobic004G120500 Sobic006G264700 Sobic006G264700 Sobic007G220200--Sobic006G264700 Sobic001G303900 Sobic001G303900 Sobic001G316300--Sobic001G303900 Sobic009G157800 Sobic009G157800 Sobic001G316300--Sobic009G157800 Sobic002G228900 Sobic002G228900 Sobic001G316300--Sobic002G228900 Sobic003G212000 Sobic003G212000 Sobic001G316300--Sobic003G212000 Sobic002G113200 Sobic002G113200 Sobic001G316300--Sobic002G113200 Sobic001G316300--Sobic003G137600 Sobic004G173700 Sobic004G173700 Sobic001G316300--Sobic004G173700 Sobic003G234500 Sobic003G234500 Sobic001G316300--Sobic003G234500 Sobic004G247500 Sobic004G247500 Sobic001G316300--Sobic004G247500 Sobic004G060400 Sobic004G060400 Sobic007G019700--Sobic004G060400 Sobic006G232700 Sobic006G232700 Sobic007G019700--Sobic006G232700 Sobic010G074000 Sobic010G074000 Sobic007G019700--Sobic010G074000 Sobic003G254200 Sobic003G254200 Sobic007G019700--Sobic003G254200 Sobic002G298201 Sobic002G298201 Sobic007G019700--Sobic002G298201 Sobic001G196400 Sobic001G196400 Sobic007G019700--Sobic001G196400 Sobic005G161400 Sobic005G161400 Sobic007G019700--Sobic005G161400 Sobic003G317000 Sobic003G317000 Sobic007G019700--Sobic003G317000 Sobic005G147900 Sobic005G147900 Sobic007G019700--Sobic005G147900 Sobic003G137600--Sobic004G173700 Sobic003G137600--Sobic003G212000 Sobic003G137600--Sobic003G234500 Sobic006G120900 Sobic006G120900 Sobic003G137600--Sobic006G120900 Sobic003G137600--Sobic002G113200 Sobic001G365700 Sobic001G365700 Sobic003G137600--Sobic001G365700 Sobic007G212100 Sobic007G212100 Sobic003G137600--Sobic007G212100 Sobic003G284100 Sobic003G284100 Sobic003G137600--Sobic003G284100 Sobic009G189700 Sobic009G189700 Sobic003G137600--Sobic009G189700 Sobic001G541601--Sobic006G264700 Sobic010G096500 Sobic010G096500 Sobic001G541601--Sobic010G096500 Sobic001G229100 Sobic001G229100 Sobic001G541601--Sobic001G229100 Sobic003G270700 Sobic003G270700 Sobic001G541601--Sobic003G270700 Sobic010G196300 Sobic010G196300 Sobic001G541601--Sobic010G196300 Sobic001G541601--Sobic008G139500 Sobic001G487000 Sobic001G487000 Sobic001G541601--Sobic001G487000 Sobic004G323500 Sobic004G323500 Sobic001G541601--Sobic004G323500 Sobic004G025900 Sobic004G025900 Sobic001G541601--Sobic004G025900 Sobic001G350100--Sobic004G120500 Sobic005G144000 Sobic005G144000 Sobic001G350100--Sobic005G144000 Sobic004G253200 Sobic004G253200 Sobic001G350100--Sobic004G253200 Sobic003G187700 Sobic003G187700 Sobic001G350100--Sobic003G187700 Sobic008G055600 Sobic008G055600 Sobic001G350100--Sobic008G055600 Sobic001G350100--Sobic003G234500 Sobic002G170100 Sobic002G170100 Sobic001G350100--Sobic002G170100 Sobic001G350100--Sobic009G189700 Sobic008G122800 Sobic008G122800 Sobic001G350100--Sobic008G122800 Sobic004G074900 Sobic004G074900 Sobic008G141600--Sobic004G074900 Sobic003G238250 Sobic003G238250 Sobic008G141600--Sobic003G238250 Sobic002G368100 Sobic002G368100 Sobic008G141600--Sobic002G368100 Sobic007G101600 Sobic007G101600 Sobic008G141600--Sobic007G101600 Sobic010G006800 Sobic010G006800 Sobic008G141600--Sobic010G006800 Sobic001G490950 Sobic001G490950 Sobic008G141600--Sobic001G490950 Sobic002G102300 Sobic002G102300 Sobic008G141600--Sobic002G102300 Sobic006G267100 Sobic006G267100 Sobic008G141600--Sobic006G267100 Sobic007G138000 Sobic007G138000 Sobic008G141600--Sobic007G138000 Sobic006G028600 Sobic006G028600 Sobic008G139500--Sobic006G028600 Sobic009G008000 Sobic009G008000 Sobic008G139500--Sobic009G008000 Sobic003G100600 Sobic003G100600 Sobic008G139500--Sobic003G100600 Sobic004G002300 Sobic004G002300 Sobic008G139500--Sobic004G002300 Sobic004G190400 Sobic004G190400 Sobic008G139500--Sobic004G190400 Sobic002G035733 Sobic002G035733 Sobic008G139500--Sobic002G035733 Sobic001G315000 Sobic001G315000 Sobic008G139500--Sobic001G315000 Sobic007G109301 Sobic007G109301 Sobic008G139500--Sobic007G109301 Sobic002G189500 Sobic002G189500 Sobic008G139500--Sobic002G189500 Sobic004G120500--Sobic004G253200 Sobic004G120500--Sobic009G189700 Sobic004G120500--Sobic008G055600 Sobic004G120500--Sobic005G144000 Sobic004G120500--Sobic001G350100 Sobic004G120500--Sobic003G187700 Sobic004G120500--Sobic002G170100 Sobic001G503600 Sobic001G503600 Sobic004G120500--Sobic001G503600 Sobic009G119600 Sobic009G119600 Sobic004G120500--Sobic009G119600 Sobic006G264700--Sobic004G323500 Sobic006G115800 Sobic006G115800 Sobic006G264700--Sobic006G115800 Sobic006G264700--Sobic001G229100 Sobic006G264700--Sobic004G025900 Sobic006G264700--Sobic001G315000 Sobic005G217101 Sobic005G217101 Sobic006G264700--Sobic005G217101 Sobic006G264700--Sobic006G028600 Sobic006G264700--Sobic010G196300 Sobic001G500900 Sobic001G500900 Sobic006G264700--Sobic001G500900
Octagon: transcription factors


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