Gene annotation
| Transcriptome id | Sobic.008G014100.1 |
|---|---|
| Synonym | Sb08g001260, ACA11 |
| Functional annotation | "Ca ATPase, IIB type" (PubMedID : 22196357) calcium-transporting ATPase, plasma membrane-type, putative, expressed |
| UniProt | C5YQK4 |
| Pfam | PF00690 PF00702 PF12515 PF00122 PF00689 |
| Panther DB | PTHR24093 PTHR24093:SF306 |
| NCBI CDD | - |
| KEGG Orthology | K01537; P-type Ca2+ transporter type 2C |
| Gene Ontology | GO:0005516; calmodulin binding GO:0000166nucleotide binding |
Orthologs (automatic annotation)
| TAIR | AT3G57330 : autoinhibited Ca2+-ATPase 11 |
|---|---|
| RAP-DB (Rice) | LOC_Os12g04220.1 : calcium-transporting ATPase, plasma membrane-type, putative, expressed |
| MaizeGDB (Corn) | Zm00025a053689 , Zm00025a033430 |
| Brachypodium | PNT65496 , PNT65497 , KQJ92384 |
| Barley | HORVU5Hr1G043640.13 , HORVU5Hr1G043640.16 , HORVU5Hr1G043640.17 , HORVU5Hr1G043640.14 , HORVU5Hr1G043640.15 , HORVU5Hr1G043640.12 , HORVU5Hr1G043640.10 , HORVU5Hr1G043640.11 , HORVU5Hr1G043640.4 , HORVU5Hr1G043640.5 , HORVU5Hr1G043640.6 , HORVU5Hr1G043640.7 , HORVU5Hr1G043640.1 , HORVU5Hr1G043640.2 , HORVU5Hr1G043640.8 , HORVU5Hr1G043640.9 |
| Wheat | TraesCS5D02G142900 , TraesCS5D02G142900 , TraesCS5B02G135200 , TraesCS5B02G135200 , TraesCS5B02G135200 , TraesCS5A02G136200 |
| Populus | PNT52247 |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G085600 | ABC transporter, ATP-binding protein, putative, expressed | - |
| 2 | Sobic.002G218500 | lecithine cholesterol acyltransferase, putative, expressed | K00679: phospholipid:diacylglycerol acyltransferase |
| 3 | Sobic.004G016400 | CDP-alcohol phosphatidyltransferase, putative, expressed | K00993: ethanolaminephosphotransferase |
| 4 | Sobic.010G023700 | Transketolase(PubMedID : 26186930)@transketolase, chloroplast precursor, putative, expressed | K00615: E2.2.1.1, tktA, transketolase |
| 5 | Sobic.001G384800 | expressed protein | - |
| 6 | Sobic.001G415400 | PsbP, putative, expressed | - |
| 7 | Sobic.002G353300 | Geranilgeranil pyrophosphate synthetase 1 GGPS1 (Os)(PubMedID : 27208977)@polyprenyl synthetase, putative, expressed | K13789: geranylgeranyl diphosphate synthase, type II |
| 8 | Sobic.001G025400 | fumarylacetoacetase, putative, expressed | K01557: acylpyruvate hydrolase |
| 9 | Sobic.007G089500 | syntaxin 6, N-terminal domain containing protein, expressed | - |
| 10 | Sobic.009G168600 | low photochemical bleaching 1 protein, putative, expressed | - |
| 11 | Sobic.010G016900 | calcium-dependent protein kinase isoform AK1, putative, expressed | K13412: calcium-dependent protein kinase |
| 12 | Sobic.007G013000 | transferase family protein, putative, expressed | - |
| 13 | Sobic.006G181000 | -(PubMedID : 23915383)@PINHEAD, putative, expressed | K11593: ELF2C, eukaryotic translation initiation factor 2C |
| 14 | Sobic.001G495300 | expressed protein | - |
| 15 | Sobic.001G261545 | - | K01669: deoxyribodipyrimidine photo-lyase |
| 16 | Sobic.007G029700 | BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed | - |
| 17 | Sobic.005G100600 | bZIP transcription factor domain containing protein, expressed | - |
| 18 | Sobic.003G319800 | bHelix-loop-helix transcription factor, putative, expressed | - |
| 19 | Sobic.001G233400 | Citrate transporter protein, putative, expressed | - |
| 20 | Sobic.001G202000 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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