Gene annotation
Transcriptome id Sobic.008G040100.2,Sobic.008G040100.1
Synonym Sb08g003460
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1Z5R4N4 , C5YS43
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF490
NCBI CDD KOG0265; U5 snRNP-specific protein-like factor and related proteins
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G54520 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g21490.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a029051 , Zm00025a022727
Brachypodium KQJ81983 , KQJ81984 , KQJ81985 , KQJ81986 , KQJ81987 , KQJ81988
Barley HORVU2Hr1G011560.11 , HORVU2Hr1G011560.10 , HORVU2Hr1G011560.1 , HORVU2Hr1G011560.3 , HORVU2Hr1G011560.2 , HORVU2Hr1G011560.5 , HORVU2Hr1G011560.4 , HORVU2Hr1G011560.7 , HORVU2Hr1G011560.9 , HORVU2Hr1G011560.8 , HORVU2Hr1G011560.6
Wheat TraesCS2A02G061500 , TraesCS2B02G074700 , TraesCS2D02G060600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G098200 peroxidase family protein, expressed -
2 Sobic.001G198400 mutS domain V family protein, expressed -
3 Sobic.006G216100 expressed protein -
4 Sobic.002G011800 expressed protein -
5 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
6 Sobic.003G155300 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
7 Sobic.008G140700 RNA recognition motif containing protein, putative, expressed -
8 Sobic.001G094600 pentatricopeptide, putative, expressed -
9 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
10 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
11 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
12 Sobic.004G185800 expressed protein -
13 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -
14 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
15 Sobic.006G252900 ubiquitin family protein, putative, expressed -
16 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
17 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
18 Sobic.002G278000 endonuclease/exonuclease/phosphatase family protein, putative, expressed K10772: AP endonuclease 2
19 Sobic.004G034800 OsFBX440 - F-box domain containing protein, expressed -
20 Sobic.004G023000 SAC9, putative, expressed -


Gene co-expression network
sample Sobic008G040100 Sobic008G040100 Sobic010G098200 Sobic010G098200 Sobic008G040100--Sobic010G098200 Sobic001G198400 Sobic001G198400 Sobic008G040100--Sobic001G198400 Sobic006G216100 Sobic006G216100 Sobic008G040100--Sobic006G216100 Sobic002G011800 Sobic002G011800 Sobic008G040100--Sobic002G011800 Sobic009G129100 Sobic009G129100 Sobic008G040100--Sobic009G129100 Sobic003G155300 Sobic003G155300 Sobic008G040100--Sobic003G155300 Sobic008G140700 Sobic008G140700 Sobic008G040100--Sobic008G140700 Sobic001G094600 Sobic001G094600 Sobic008G040100--Sobic001G094600 Sobic006G234700 Sobic006G234700 Sobic008G040100--Sobic006G234700 Sobic002G298100 Sobic002G298100 Sobic010G098200--Sobic002G298100 Sobic010G098200--Sobic006G234700 Sobic007G017800 Sobic007G017800 Sobic010G098200--Sobic007G017800 Sobic010G140400 Sobic010G140400 Sobic010G098200--Sobic010G140400 Sobic001G022500 Sobic001G022500 Sobic010G098200--Sobic001G022500 Sobic001G166600 Sobic001G166600 Sobic010G098200--Sobic001G166600 Sobic006G155100 Sobic006G155100 Sobic010G098200--Sobic006G155100 Sobic009G092900 Sobic009G092900 Sobic010G098200--Sobic009G092900 Sobic010G098200--Sobic009G129100 Sobic006G038500 Sobic006G038500 Sobic001G198400--Sobic006G038500 Sobic004G079800 Sobic004G079800 Sobic001G198400--Sobic004G079800 Sobic003G234900 Sobic003G234900 Sobic001G198400--Sobic003G234900 Sobic004G120100 Sobic004G120100 Sobic001G198400--Sobic004G120100 Sobic002G347600 Sobic002G347600 Sobic001G198400--Sobic002G347600 Sobic004G163800 Sobic004G163800 Sobic001G198400--Sobic004G163800 Sobic001G528800 Sobic001G528800 Sobic001G198400--Sobic001G528800 Sobic001G198400--Sobic006G216100 Sobic002G042500 Sobic002G042500 Sobic001G198400--Sobic002G042500 Sobic004G034800 Sobic004G034800 Sobic006G216100--Sobic004G034800 Sobic002G042800 Sobic002G042800 Sobic006G216100--Sobic002G042800 Sobic003G168100 Sobic003G168100 Sobic006G216100--Sobic003G168100 Sobic001G455600 Sobic001G455600 Sobic006G216100--Sobic001G455600 Sobic006G252900 Sobic006G252900 Sobic006G216100--Sobic006G252900 Sobic009G132700 Sobic009G132700 Sobic006G216100--Sobic009G132700 Sobic007G031900 Sobic007G031900 Sobic006G216100--Sobic007G031900 Sobic003G398700 Sobic003G398700 Sobic006G216100--Sobic003G398700 Sobic004G244900 Sobic004G244900 Sobic006G216100--Sobic004G244900 Sobic002G011800--Sobic006G234700 Sobic002G083500 Sobic002G083500 Sobic002G011800--Sobic002G083500 Sobic003G444800 Sobic003G444800 Sobic002G011800--Sobic003G444800 Sobic010G273000 Sobic010G273000 Sobic002G011800--Sobic010G273000 Sobic001G016600 Sobic001G016600 Sobic002G011800--Sobic001G016600 Sobic009G228000 Sobic009G228000 Sobic002G011800--Sobic009G228000 Sobic003G170700 Sobic003G170700 Sobic002G011800--Sobic003G170700 Sobic002G260400 Sobic002G260400 Sobic002G011800--Sobic002G260400 Sobic004G209700 Sobic004G209700 Sobic002G011800--Sobic004G209700 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic003G067100 Sobic003G067100 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic004G185800 Sobic004G185800 Sobic009G129100--Sobic004G185800 Sobic009G129100--Sobic009G132700 Sobic003G155300--Sobic009G129100 Sobic002G148750 Sobic002G148750 Sobic003G155300--Sobic002G148750 Sobic002G293600 Sobic002G293600 Sobic003G155300--Sobic002G293600 Sobic001G227200 Sobic001G227200 Sobic003G155300--Sobic001G227200 Sobic003G149300 Sobic003G149300 Sobic003G155300--Sobic003G149300 Sobic003G155300--Sobic004G185800 Sobic002G425500 Sobic002G425500 Sobic003G155300--Sobic002G425500 Sobic006G194400 Sobic006G194400 Sobic003G155300--Sobic006G194400 Sobic008G092532 Sobic008G092532 Sobic003G155300--Sobic008G092532 Sobic001G020000 Sobic001G020000 Sobic008G140700--Sobic001G020000 Sobic001G087600 Sobic001G087600 Sobic008G140700--Sobic001G087600 Sobic010G034100 Sobic010G034100 Sobic008G140700--Sobic010G034100 Sobic003G405500 Sobic003G405500 Sobic008G140700--Sobic003G405500 Sobic003G312700 Sobic003G312700 Sobic008G140700--Sobic003G312700 Sobic003G152400 Sobic003G152400 Sobic008G140700--Sobic003G152400 Sobic008G140700--Sobic006G234700 Sobic002G227500 Sobic002G227500 Sobic008G140700--Sobic002G227500 Sobic010G059500 Sobic010G059500 Sobic008G140700--Sobic010G059500 Sobic002G103600 Sobic002G103600 Sobic001G094600--Sobic002G103600 Sobic001G094600--Sobic002G042800 Sobic010G279450 Sobic010G279450 Sobic001G094600--Sobic010G279450 Sobic008G028700 Sobic008G028700 Sobic001G094600--Sobic008G028700 Sobic001G094600--Sobic003G444800 Sobic001G311500 Sobic001G311500 Sobic001G094600--Sobic001G311500 Sobic003G095900 Sobic003G095900 Sobic001G094600--Sobic003G095900 Sobic009G247400 Sobic009G247400 Sobic001G094600--Sobic009G247400 Sobic003G052200 Sobic003G052200 Sobic001G094600--Sobic003G052200 Sobic004G096400 Sobic004G096400 Sobic006G234700--Sobic004G096400 Sobic006G234700--Sobic010G059500 Sobic009G192300 Sobic009G192300 Sobic006G234700--Sobic009G192300 Sobic007G042400 Sobic007G042400 Sobic006G234700--Sobic007G042400 Sobic006G234700--Sobic003G444800 Sobic001G493200 Sobic001G493200 Sobic006G234700--Sobic001G493200 Sobic009G084900 Sobic009G084900 Sobic006G234700--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic006G234700--Sobic001G433800 Sobic006G234700--Sobic002G083500
Octagon: transcription factors


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