Gene annotation
Transcriptome id Sobic.008G040300.1
Synonym Sb08g003480
Functional annotation RNASEH2A - Putative ribonuclease H2 large subunit, expressed
UniProt C5YS45
Pfam PF01351
Panther DB PTHR10954 PTHR10954:SF7
NCBI CDD KOG2299; Ribonuclease HI
KEGG Orthology K10743; ribonuclease H2 subunit A
Gene Ontology GO:0004523; RNA-DNA hybrid ribonuclease activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT2G25100 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os11g05570.1 : RNASEH2A - Putative ribonuclease H2 large subunit, expressed
MaizeGDB (Corn) Zm00025a053919 , Zm00025a053936
Brachypodium KQJ92197
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
2 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
3 Sobic.009G119700 acetyltransferase, GNAT family, putative, expressed -
4 Sobic.002G304400 expressed protein -
5 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
6 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
7 Sobic.004G069400 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
8 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
9 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
10 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
11 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
12 Sobic.009G088200 -(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
13 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
14 Sobic.007G079600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
15 Sobic.004G208100 expressed protein -
16 Sobic.010G144900 fiber protein Fb34, putative, expressed -
17 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
18 Sobic.002G246900 expressed protein -
19 Sobic.010G004900 CWC15 homolog A, putative, expressed K12863: protein CWC15
20 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase


Gene co-expression network
sample Sobic008G040300 Sobic008G040300 Sobic001G521100 Sobic001G521100 Sobic008G040300--Sobic001G521100 Sobic006G119300 Sobic006G119300 Sobic008G040300--Sobic006G119300 Sobic009G119700 Sobic009G119700 Sobic008G040300--Sobic009G119700 Sobic002G304400 Sobic002G304400 Sobic008G040300--Sobic002G304400 Sobic009G189200 Sobic009G189200 Sobic008G040300--Sobic009G189200 Sobic002G236700 Sobic002G236700 Sobic008G040300--Sobic002G236700 Sobic004G069400 Sobic004G069400 Sobic008G040300--Sobic004G069400 Sobic010G032700 Sobic010G032700 Sobic008G040300--Sobic010G032700 Sobic010G103700 Sobic010G103700 Sobic008G040300--Sobic010G103700 Sobic002G113400 Sobic002G113400 Sobic001G521100--Sobic002G113400 Sobic002G246900 Sobic002G246900 Sobic001G521100--Sobic002G246900 Sobic002G351100 Sobic002G351100 Sobic001G521100--Sobic002G351100 Sobic002G315400 Sobic002G315400 Sobic001G521100--Sobic002G315400 Sobic001G025900 Sobic001G025900 Sobic001G521100--Sobic001G025900 Sobic001G521100--Sobic006G119300 Sobic006G236800 Sobic006G236800 Sobic001G521100--Sobic006G236800 Sobic003G442300 Sobic003G442300 Sobic001G521100--Sobic003G442300 Sobic003G297200 Sobic003G297200 Sobic001G521100--Sobic003G297200 Sobic006G119300--Sobic002G113400 Sobic001G486600 Sobic001G486600 Sobic006G119300--Sobic001G486600 Sobic002G297500 Sobic002G297500 Sobic006G119300--Sobic002G297500 Sobic007G125300 Sobic007G125300 Sobic006G119300--Sobic007G125300 Sobic010G252200 Sobic010G252200 Sobic006G119300--Sobic010G252200 Sobic006G119300--Sobic001G521100 Sobic004G032900 Sobic004G032900 Sobic006G119300--Sobic004G032900 Sobic005G210500 Sobic005G210500 Sobic006G119300--Sobic005G210500 Sobic004G053900 Sobic004G053900 Sobic006G119300--Sobic004G053900 Sobic002G303800 Sobic002G303800 Sobic009G119700--Sobic002G303800 Sobic001G146900 Sobic001G146900 Sobic009G119700--Sobic001G146900 Sobic009G119700--Sobic010G103700 Sobic003G412800 Sobic003G412800 Sobic009G119700--Sobic003G412800 Sobic001G051300 Sobic001G051300 Sobic009G119700--Sobic001G051300 Sobic003G444300 Sobic003G444300 Sobic009G119700--Sobic003G444300 Sobic003G179500 Sobic003G179500 Sobic009G119700--Sobic003G179500 Sobic007G139500 Sobic007G139500 Sobic009G119700--Sobic007G139500 Sobic001G169800 Sobic001G169800 Sobic009G119700--Sobic001G169800 Sobic001G413100 Sobic001G413100 Sobic002G304400--Sobic001G413100 Sobic008G118300 Sobic008G118300 Sobic002G304400--Sobic008G118300 Sobic002G304400--Sobic004G069400 Sobic007G112100 Sobic007G112100 Sobic002G304400--Sobic007G112100 Sobic001G286100 Sobic001G286100 Sobic002G304400--Sobic001G286100 Sobic001G167500 Sobic001G167500 Sobic002G304400--Sobic001G167500 Sobic001G336050 Sobic001G336050 Sobic002G304400--Sobic001G336050 Sobic002G304400--Sobic001G521100 Sobic001G081900 Sobic001G081900 Sobic002G304400--Sobic001G081900 Sobic006G102900 Sobic006G102900 Sobic009G189200--Sobic006G102900 Sobic001G261549 Sobic001G261549 Sobic009G189200--Sobic001G261549 Sobic002G057500 Sobic002G057500 Sobic009G189200--Sobic002G057500 Sobic010G144900 Sobic010G144900 Sobic009G189200--Sobic010G144900 Sobic007G044400 Sobic007G044400 Sobic009G189200--Sobic007G044400 Sobic004G285900 Sobic004G285900 Sobic009G189200--Sobic004G285900 Sobic003G084300 Sobic003G084300 Sobic009G189200--Sobic003G084300 Sobic003G122200 Sobic003G122200 Sobic009G189200--Sobic003G122200 Sobic001G131600 Sobic001G131600 Sobic009G189200--Sobic001G131600 Sobic002G236700--Sobic002G246900 Sobic001G140700 Sobic001G140700 Sobic002G236700--Sobic001G140700 Sobic001G532800 Sobic001G532800 Sobic002G236700--Sobic001G532800 Sobic003G107200 Sobic003G107200 Sobic002G236700--Sobic003G107200 Sobic009G109300 Sobic009G109300 Sobic002G236700--Sobic009G109300 Sobic002G236700--Sobic007G112100 Sobic002G236700--Sobic002G315400 Sobic007G218100 Sobic007G218100 Sobic002G236700--Sobic007G218100 Sobic010G191000 Sobic010G191000 Sobic002G236700--Sobic010G191000 Sobic004G069400--Sobic001G286100 Sobic004G069400--Sobic001G140700 Sobic002G268700 Sobic002G268700 Sobic004G069400--Sobic002G268700 Sobic004G069400--Sobic001G413100 Sobic002G232400 Sobic002G232400 Sobic004G069400--Sobic002G232400 Sobic004G069400--Sobic002G304400 Sobic009G220000 Sobic009G220000 Sobic004G069400--Sobic009G220000 Sobic004G069400--Sobic006G119300 Sobic009G244900 Sobic009G244900 Sobic004G069400--Sobic009G244900 Sobic001G371100 Sobic001G371100 Sobic010G032700--Sobic001G371100 Sobic010G032700--Sobic009G119700 Sobic002G280700 Sobic002G280700 Sobic010G032700--Sobic002G280700 Sobic009G088200 Sobic009G088200 Sobic010G032700--Sobic009G088200 Sobic004G343600 Sobic004G343600 Sobic010G032700--Sobic004G343600 Sobic002G054000 Sobic002G054000 Sobic010G032700--Sobic002G054000 Sobic002G319200 Sobic002G319200 Sobic010G032700--Sobic002G319200 Sobic002G045100 Sobic002G045100 Sobic010G032700--Sobic002G045100 Sobic001G228200 Sobic001G228200 Sobic010G032700--Sobic001G228200 Sobic003G183700 Sobic003G183700 Sobic010G103700--Sobic003G183700 Sobic010G103700--Sobic003G179500 Sobic006G120600 Sobic006G120600 Sobic010G103700--Sobic006G120600 Sobic006G195500 Sobic006G195500 Sobic010G103700--Sobic006G195500 Sobic006G051000 Sobic006G051000 Sobic010G103700--Sobic006G051000 Sobic009G087000 Sobic009G087000 Sobic010G103700--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic010G103700--Sobic010G147700 Sobic006G116500 Sobic006G116500 Sobic010G103700--Sobic006G116500 Sobic004G355500 Sobic004G355500 Sobic010G103700--Sobic004G355500
Octagon: transcription factors


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