Gene annotation
Transcriptome id Sobic.008G065000.1
Synonym Sb08g005430
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
thylakoid lumenal 29.8 kDa protein, putative, expressed
UniProt C5YTA5
Pfam PF01789
Panther DB PTHR31407 PTHR31407:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT1G77090 : Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
RAP-DB (Rice) LOC_Os12g08830.1 : thylakoid lumenal 29.8 kDa protein, putative, expressed
MaizeGDB (Corn) Zm00025a025689
Brachypodium KQJ91945 , KQJ91946
Barley HORVU2Hr1G086040.8 , HORVU2Hr1G086040.6 , HORVU2Hr1G086040.7 , HORVU2Hr1G086040.4 , HORVU2Hr1G086040.5 , HORVU2Hr1G086040.2 , HORVU2Hr1G086040.3 , HORVU2Hr1G086040.1
Wheat TraesCS2B02G372700 , TraesCS2B02G372700 , TraesCS2D02G352700 , TraesCS2D02G352700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G370000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
2 Sobic.008G061401 - -
3 Sobic.008G064500 TPR domain protein, putative, expressed -
4 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
5 Sobic.001G289500 kinase, pfkB family, putative, expressed -
6 Sobic.004G028300 expressed protein -
7 Sobic.006G235350 - -
8 Sobic.003G005000 expressed protein -
9 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
10 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
11 Sobic.007G173800 uncharacterized protein ycf39, putative, expressed -
12 Sobic.002G223700 OsRhmbd15 - Putative Rhomboid homologue, expressed -
13 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
14 Sobic.007G108900 APE1, putative, expressed -
15 Sobic.005G200200 expressed protein -
16 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
17 Sobic.009G210200 Acid phosphatase/vanadium-dependent haloperoxidase-related protein(PubMedID : 26465154)@Divergent PAP2 family domain containing protein, expressed -
18 Sobic.005G056400 Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
19 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
20 Sobic.005G101300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -


Gene co-expression network
sample Sobic008G065000 Sobic008G065000 Sobic003G370000 Sobic003G370000 Sobic008G065000--Sobic003G370000 Sobic008G061401 Sobic008G061401 Sobic008G065000--Sobic008G061401 Sobic008G064500 Sobic008G064500 Sobic008G065000--Sobic008G064500 Sobic002G047400 Sobic002G047400 Sobic008G065000--Sobic002G047400 Sobic001G289500 Sobic001G289500 Sobic008G065000--Sobic001G289500 Sobic004G028300 Sobic004G028300 Sobic008G065000--Sobic004G028300 Sobic006G235350 Sobic006G235350 Sobic008G065000--Sobic006G235350 Sobic003G005000 Sobic003G005000 Sobic008G065000--Sobic003G005000 Sobic010G181300 Sobic010G181300 Sobic008G065000--Sobic010G181300 Sobic007G161500 Sobic007G161500 Sobic003G370000--Sobic007G161500 Sobic003G370000--Sobic001G289500 Sobic005G056400 Sobic005G056400 Sobic003G370000--Sobic005G056400 Sobic002G370600 Sobic002G370600 Sobic003G370000--Sobic002G370600 Sobic002G314300 Sobic002G314300 Sobic003G370000--Sobic002G314300 Sobic004G305800 Sobic004G305800 Sobic003G370000--Sobic004G305800 Sobic001G020100 Sobic001G020100 Sobic003G370000--Sobic001G020100 Sobic004G238600 Sobic004G238600 Sobic003G370000--Sobic004G238600 Sobic001G076900 Sobic001G076900 Sobic003G370000--Sobic001G076900 Sobic003G234400 Sobic003G234400 Sobic008G061401--Sobic003G234400 Sobic009G043000 Sobic009G043000 Sobic008G061401--Sobic009G043000 Sobic006G067400 Sobic006G067400 Sobic008G061401--Sobic006G067400 Sobic008G061401--Sobic003G370000 Sobic010G153900 Sobic010G153900 Sobic008G061401--Sobic010G153900 Sobic005G200200 Sobic005G200200 Sobic008G061401--Sobic005G200200 Sobic008G188600 Sobic008G188600 Sobic008G061401--Sobic008G188600 Sobic007G173800 Sobic007G173800 Sobic008G061401--Sobic007G173800 Sobic008G061401--Sobic001G076900 Sobic008G064500--Sobic006G235350 Sobic009G210200 Sobic009G210200 Sobic008G064500--Sobic009G210200 Sobic006G140500 Sobic006G140500 Sobic008G064500--Sobic006G140500 Sobic008G064500--Sobic003G370000 Sobic008G064500--Sobic002G314300 Sobic008G064500--Sobic001G289500 Sobic008G064500--Sobic003G005000 Sobic004G303200 Sobic004G303200 Sobic008G064500--Sobic004G303200 Sobic008G064500--Sobic002G047400 Sobic009G225600 Sobic009G225600 Sobic002G047400--Sobic009G225600 Sobic008G149100 Sobic008G149100 Sobic002G047400--Sobic008G149100 Sobic003G186800 Sobic003G186800 Sobic002G047400--Sobic003G186800 Sobic001G046000 Sobic001G046000 Sobic002G047400--Sobic001G046000 Sobic003G228300 Sobic003G228300 Sobic002G047400--Sobic003G228300 Sobic001G015200 Sobic001G015200 Sobic002G047400--Sobic001G015200 Sobic010G101000 Sobic010G101000 Sobic002G047400--Sobic010G101000 Sobic001G509200 Sobic001G509200 Sobic002G047400--Sobic001G509200 Sobic001G485100 Sobic001G485100 Sobic002G047400--Sobic001G485100 Sobic001G289500--Sobic003G005000 Sobic001G491000 Sobic001G491000 Sobic001G289500--Sobic001G491000 Sobic004G202200 Sobic004G202200 Sobic001G289500--Sobic004G202200 Sobic006G238200 Sobic006G238200 Sobic001G289500--Sobic006G238200 Sobic006G102000 Sobic006G102000 Sobic001G289500--Sobic006G102000 Sobic001G289500--Sobic010G181300 Sobic007G108900 Sobic007G108900 Sobic001G289500--Sobic007G108900 Sobic003G094100 Sobic003G094100 Sobic001G289500--Sobic003G094100 Sobic002G275300 Sobic002G275300 Sobic001G289500--Sobic002G275300 Sobic008G088821 Sobic008G088821 Sobic004G028300--Sobic008G088821 Sobic001G167900 Sobic001G167900 Sobic004G028300--Sobic001G167900 Sobic004G028300--Sobic006G140500 Sobic006G063900 Sobic006G063900 Sobic004G028300--Sobic006G063900 Sobic004G028300--Sobic001G015200 Sobic005G134100 Sobic005G134100 Sobic004G028300--Sobic005G134100 Sobic003G419900 Sobic003G419900 Sobic004G028300--Sobic003G419900 Sobic004G359600 Sobic004G359600 Sobic004G028300--Sobic004G359600 Sobic006G108200 Sobic006G108200 Sobic004G028300--Sobic006G108200 Sobic006G235350--Sobic006G140500 Sobic006G235350--Sobic004G202200 Sobic007G166300 Sobic007G166300 Sobic006G235350--Sobic007G166300 Sobic005G028800 Sobic005G028800 Sobic006G235350--Sobic005G028800 Sobic006G235350--Sobic003G005000 Sobic006G235350--Sobic001G289500 Sobic002G223700 Sobic002G223700 Sobic006G235350--Sobic002G223700 Sobic006G235350--Sobic001G015200 Sobic009G132000 Sobic009G132000 Sobic006G235350--Sobic009G132000 Sobic003G005000--Sobic001G289500 Sobic003G005000--Sobic003G094100 Sobic003G005000--Sobic009G132000 Sobic002G306800 Sobic002G306800 Sobic003G005000--Sobic002G306800 Sobic003G005000--Sobic007G108900 Sobic010G039500 Sobic010G039500 Sobic003G005000--Sobic010G039500 Sobic009G133700 Sobic009G133700 Sobic003G005000--Sobic009G133700 Sobic007G157300 Sobic007G157300 Sobic003G005000--Sobic007G157300 Sobic004G035900 Sobic004G035900 Sobic003G005000--Sobic004G035900 Sobic010G181300--Sobic001G491000 Sobic010G181300--Sobic002G275300 Sobic010G181300--Sobic006G238200 Sobic010G181300--Sobic007G108900 Sobic009G129300 Sobic009G129300 Sobic010G181300--Sobic009G129300 Sobic010G181300--Sobic001G289500 Sobic010G181300--Sobic006G102000 Sobic010G181300--Sobic002G370600 Sobic003G398800 Sobic003G398800 Sobic010G181300--Sobic003G398800
Octagon: transcription factors


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