Gene annotation
Transcriptome id Sobic.008G095000.1
Synonym Sb08g014070
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
GRAM domain containing protein, expressed
UniProt C5YNL9
Pfam PF02893
Panther DB PTHR31969 PTHR31969:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G13200 : GRAM domain family protein
RAP-DB (Rice) LOC_Os12g29400.1 : GRAM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a054133
Brachypodium KQJ86753
Barley HORVU3Hr1G047220.1 , HORVU3Hr1G047220.2 , HORVU5Hr1G006190.3 , HORVU5Hr1G006190.2 , HORVU5Hr1G115100.3 , HORVU5Hr1G115100.2 , HORVU5Hr1G115100.1
Wheat TraesCS5D02G503400 , TraesCS5D02G503400 , TraesCS5B02G502200 , TraesCS5A02G488500 , TraesCS4B02G067400
Populus -


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cDNA sequences
Sobic.008G095000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G387400 calmodulin-binding protein, putative, expressed -
2 Sobic.001G435800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-binding EF hand family protein, putative, expressed -
3 Sobic.010G220100 cell cycle control protein, putative, expressed -
4 Sobic.010G021401 - -
5 Sobic.009G114900 - -
6 Sobic.008G192800 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
7 Sobic.009G004500 expressed protein -
8 Sobic.003G093500 protein binding protein, putative, expressed -
9 Sobic.009G072400 ABC transporter, ATP-binding protein, putative, expressed -
10 Sobic.001G368000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
11 Sobic.005G155001 - -
12 Sobic.007G017300 endoglucanase, putative, expressed -
13 Sobic.002G282000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -
14 Sobic.007G090406 - -
15 Sobic.008G088803 - K12183: TSG101, STP22, ESCRT-I complex subunit TSG101
16 Sobic.002G252700 vignain precursor, putative, expressed -
17 Sobic.004G047001 - -
18 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
19 Sobic.009G236000 GATA zinc finger domain containing protein, expressed -
20 Sobic.009G184500 cysteine proteinase inhibitor precursor protein, putative, expressed -


Gene co-expression network
sample Sobic008G095000 Sobic008G095000 Sobic002G387400 Sobic002G387400 Sobic008G095000--Sobic002G387400 Sobic001G435800 Sobic001G435800 Sobic008G095000--Sobic001G435800 Sobic010G220100 Sobic010G220100 Sobic008G095000--Sobic010G220100 Sobic010G021401 Sobic010G021401 Sobic008G095000--Sobic010G021401 Sobic009G114900 Sobic009G114900 Sobic008G095000--Sobic009G114900 Sobic008G192800 Sobic008G192800 Sobic008G095000--Sobic008G192800 Sobic009G004500 Sobic009G004500 Sobic008G095000--Sobic009G004500 Sobic003G093500 Sobic003G093500 Sobic008G095000--Sobic003G093500 Sobic009G072400 Sobic009G072400 Sobic008G095000--Sobic009G072400 Sobic001G368000 Sobic001G368000 Sobic002G387400--Sobic001G368000 Sobic001G490600 Sobic001G490600 Sobic002G387400--Sobic001G490600 Sobic009G170301 Sobic009G170301 Sobic002G387400--Sobic009G170301 Sobic002G387400--Sobic008G095000 Sobic005G094500 Sobic005G094500 Sobic002G387400--Sobic005G094500 Sobic002G387400--Sobic010G021401 Sobic007G017300 Sobic007G017300 Sobic002G387400--Sobic007G017300 Sobic002G076932 Sobic002G076932 Sobic002G387400--Sobic002G076932 Sobic009G184500 Sobic009G184500 Sobic002G387400--Sobic009G184500 Sobic001G435800--Sobic010G021401 Sobic001G435800--Sobic009G072400 Sobic001G435800--Sobic009G114900 Sobic005G155001 Sobic005G155001 Sobic001G435800--Sobic005G155001 Sobic002G314950 Sobic002G314950 Sobic001G435800--Sobic002G314950 Sobic008G096900 Sobic008G096900 Sobic001G435800--Sobic008G096900 Sobic008G185000 Sobic008G185000 Sobic001G435800--Sobic008G185000 Sobic010G257300 Sobic010G257300 Sobic001G435800--Sobic010G257300 Sobic001G435800--Sobic010G220100 Sobic010G220100--Sobic008G185000 Sobic001G341900 Sobic001G341900 Sobic010G220100--Sobic001G341900 Sobic010G220100--Sobic001G435800 Sobic002G252700 Sobic002G252700 Sobic010G220100--Sobic002G252700 Sobic010G220100--Sobic009G114900 Sobic004G337700 Sobic004G337700 Sobic010G220100--Sobic004G337700 Sobic010G220100--Sobic005G155001 Sobic007G061500 Sobic007G061500 Sobic010G220100--Sobic007G061500 Sobic007G213500 Sobic007G213500 Sobic010G220100--Sobic007G213500 Sobic010G021401--Sobic005G155001 Sobic010G021401--Sobic009G114900 Sobic010G021401--Sobic009G004500 Sobic001G483200 Sobic001G483200 Sobic010G021401--Sobic001G483200 Sobic001G527900 Sobic001G527900 Sobic010G021401--Sobic001G527900 Sobic007G090406 Sobic007G090406 Sobic010G021401--Sobic007G090406 Sobic010G021401--Sobic002G252700 Sobic010G021401--Sobic008G185000 Sobic010G021401--Sobic008G192800 Sobic009G114900--Sobic005G155001 Sobic009G114900--Sobic010G021401 Sobic009G114900--Sobic007G090406 Sobic009G114900--Sobic002G252700 Sobic009G114900--Sobic009G004500 Sobic006G093400 Sobic006G093400 Sobic009G114900--Sobic006G093400 Sobic009G114900--Sobic008G192800 Sobic009G114900--Sobic001G527900 Sobic009G114900--Sobic001G483200 Sobic008G192800--Sobic007G090406 Sobic008G192800--Sobic009G004500 Sobic008G192800--Sobic003G093500 Sobic001G176800 Sobic001G176800 Sobic008G192800--Sobic001G176800 Sobic008G192800--Sobic009G114900 Sobic008G192800--Sobic005G155001 Sobic008G192800--Sobic007G017300 Sobic008G192800--Sobic007G061500 Sobic008G192800--Sobic001G368000 Sobic009G004500--Sobic007G017300 Sobic009G004500--Sobic001G483200 Sobic009G004500--Sobic005G155001 Sobic009G004500--Sobic001G368000 Sobic009G004500--Sobic007G061500 Sobic001G028500 Sobic001G028500 Sobic009G004500--Sobic001G028500 Sobic009G004500--Sobic003G093500 Sobic009G004500--Sobic010G021401 Sobic001G060200 Sobic001G060200 Sobic009G004500--Sobic001G060200 Sobic003G093500--Sobic009G004500 Sobic003G093500--Sobic007G061500 Sobic003G093500--Sobic007G017300 Sobic003G093500--Sobic001G341900 Sobic003G093500--Sobic008G192800 Sobic009G045100 Sobic009G045100 Sobic003G093500--Sobic009G045100 Sobic003G093500--Sobic005G155001 Sobic004G224100 Sobic004G224100 Sobic003G093500--Sobic004G224100 Sobic003G093500--Sobic001G060200 Sobic001G068901 Sobic001G068901 Sobic009G072400--Sobic001G068901 Sobic009G072400--Sobic010G257300 Sobic009G072400--Sobic006G093400 Sobic004G012100 Sobic004G012100 Sobic009G072400--Sobic004G012100 Sobic001G537600 Sobic001G537600 Sobic009G072400--Sobic001G537600 Sobic010G242100 Sobic010G242100 Sobic009G072400--Sobic010G242100 Sobic009G072400--Sobic008G096900 Sobic010G253700 Sobic010G253700 Sobic009G072400--Sobic010G253700 Sobic009G072400--Sobic001G435800
Octagon: transcription factors


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