Gene annotation
Transcriptome id Sobic.009G143300.1
Synonym Sb09g020840, SKP2A
Functional annotation OsFBL22 - F-box domain and LRR containing protein, expressed
UniProt C5YY77
Pfam PF13516
Panther DB PTHR24006
NCBI CDD -
KEGG Orthology K03875; SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21410 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os05g35110.1 : OsFBL22 - F-box domain and LRR containing protein, expressed
MaizeGDB (Corn) Zm00025a043737
Brachypodium KQK06155 , KQK06154 , KQK06157 , KQK06156 , KQK06158
Barley HORVU1Hr1G065030.4 , HORVU1Hr1G065030.3 , HORVU1Hr1G065030.2 , HORVU1Hr1G065030.1 , HORVU3Hr1G091200.1 , HORVU3Hr1G091200.2 , HORVU3Hr1G091200.5 , HORVU3Hr1G091200.4
Wheat TraesCS3B02G440600 , TraesCS3B02G440600 , TraesCS1B02G275600 , TraesCS3D02G402900 , TraesCS3D02G402900 , TraesCS1A02G264900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G143300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G128600 miro, putative, expressed K07953: GTP-binding protein SAR1
2 Sobic.010G219400 endonuclease V, putative, expressed -
3 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
5 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
6 Sobic.007G078600 YT521-B, putative, expressed -
7 Sobic.004G205600 bromodomain domain containing protein, expressed -
8 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
9 Sobic.010G067700 expressed protein -
10 Sobic.010G118000 PHD-finger family protein, expressed K17586: PHD and RING finger domain-containing protein 1
11 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
12 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
13 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
14 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
15 Sobic.002G382600 expressed protein -
16 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
17 Sobic.002G034600 zinc ion binding protein, putative, expressed -
18 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
19 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
20 Sobic.003G084700 - -


Gene co-expression network
sample Sobic009G143300 Sobic009G143300 Sobic008G128600 Sobic008G128600 Sobic009G143300--Sobic008G128600 Sobic010G219400 Sobic010G219400 Sobic009G143300--Sobic010G219400 Sobic006G182200 Sobic006G182200 Sobic009G143300--Sobic006G182200 Sobic003G081000 Sobic003G081000 Sobic009G143300--Sobic003G081000 Sobic003G408500 Sobic003G408500 Sobic009G143300--Sobic003G408500 Sobic007G078600 Sobic007G078600 Sobic009G143300--Sobic007G078600 Sobic004G205600 Sobic004G205600 Sobic009G143300--Sobic004G205600 Sobic004G034400 Sobic004G034400 Sobic009G143300--Sobic004G034400 Sobic010G067700 Sobic010G067700 Sobic009G143300--Sobic010G067700 Sobic008G128600--Sobic010G067700 Sobic009G054700 Sobic009G054700 Sobic008G128600--Sobic009G054700 Sobic001G512900 Sobic001G512900 Sobic008G128600--Sobic001G512900 Sobic003G250500 Sobic003G250500 Sobic008G128600--Sobic003G250500 Sobic001G131800 Sobic001G131800 Sobic008G128600--Sobic001G131800 Sobic009G178600 Sobic009G178600 Sobic008G128600--Sobic009G178600 Sobic001G083600 Sobic001G083600 Sobic008G128600--Sobic001G083600 Sobic009G198100 Sobic009G198100 Sobic008G128600--Sobic009G198100 Sobic006G252300 Sobic006G252300 Sobic008G128600--Sobic006G252300 Sobic006G200600 Sobic006G200600 Sobic010G219400--Sobic006G200600 Sobic003G266001 Sobic003G266001 Sobic010G219400--Sobic003G266001 Sobic010G118000 Sobic010G118000 Sobic010G219400--Sobic010G118000 Sobic008G179700 Sobic008G179700 Sobic010G219400--Sobic008G179700 Sobic003G401100 Sobic003G401100 Sobic010G219400--Sobic003G401100 Sobic010G219400--Sobic007G078600 Sobic007G075900 Sobic007G075900 Sobic010G219400--Sobic007G075900 Sobic008G089100 Sobic008G089100 Sobic010G219400--Sobic008G089100 Sobic001G281600 Sobic001G281600 Sobic010G219400--Sobic001G281600 Sobic004G274200 Sobic004G274200 Sobic006G182200--Sobic004G274200 Sobic001G473600 Sobic001G473600 Sobic006G182200--Sobic001G473600 Sobic001G016000 Sobic001G016000 Sobic006G182200--Sobic001G016000 Sobic004G353000 Sobic004G353000 Sobic006G182200--Sobic004G353000 Sobic001G360200 Sobic001G360200 Sobic006G182200--Sobic001G360200 Sobic010G116600 Sobic010G116600 Sobic006G182200--Sobic010G116600 Sobic001G466700 Sobic001G466700 Sobic006G182200--Sobic001G466700 Sobic004G339100 Sobic004G339100 Sobic006G182200--Sobic004G339100 Sobic002G283600 Sobic002G283600 Sobic006G182200--Sobic002G283600 Sobic007G118200 Sobic007G118200 Sobic003G081000--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic003G081000--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic003G081000--Sobic002G034600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic006G252700 Sobic006G252700 Sobic003G081000--Sobic006G252700 Sobic010G033400 Sobic010G033400 Sobic003G081000--Sobic010G033400 Sobic003G081000--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic003G081000--Sobic004G350100 Sobic009G166300 Sobic009G166300 Sobic003G408500--Sobic009G166300 Sobic005G045300 Sobic005G045300 Sobic003G408500--Sobic005G045300 Sobic001G512700 Sobic001G512700 Sobic003G408500--Sobic001G512700 Sobic003G408500--Sobic004G205600 Sobic007G217000 Sobic007G217000 Sobic003G408500--Sobic007G217000 Sobic003G397800 Sobic003G397800 Sobic003G408500--Sobic003G397800 Sobic004G021100 Sobic004G021100 Sobic003G408500--Sobic004G021100 Sobic001G109800 Sobic001G109800 Sobic003G408500--Sobic001G109800 Sobic004G067700 Sobic004G067700 Sobic003G408500--Sobic004G067700 Sobic008G047800 Sobic008G047800 Sobic007G078600--Sobic008G047800 Sobic003G394300 Sobic003G394300 Sobic007G078600--Sobic003G394300 Sobic003G084700 Sobic003G084700 Sobic007G078600--Sobic003G084700 Sobic006G118700 Sobic006G118700 Sobic007G078600--Sobic006G118700 Sobic007G078600--Sobic006G200600 Sobic009G179700 Sobic009G179700 Sobic007G078600--Sobic009G179700 Sobic007G078500 Sobic007G078500 Sobic007G078600--Sobic007G078500 Sobic002G134200 Sobic002G134200 Sobic007G078600--Sobic002G134200 Sobic002G133400 Sobic002G133400 Sobic007G078600--Sobic002G133400 Sobic004G057400 Sobic004G057400 Sobic004G205600--Sobic004G057400 Sobic001G497300 Sobic001G497300 Sobic004G205600--Sobic001G497300 Sobic001G090400 Sobic001G090400 Sobic004G205600--Sobic001G090400 Sobic004G205600--Sobic003G081000 Sobic007G026300 Sobic007G026300 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic010G042900 Sobic010G042900 Sobic004G034400--Sobic010G042900 Sobic002G010300 Sobic002G010300 Sobic004G034400--Sobic002G010300 Sobic004G034400--Sobic009G054700 Sobic006G209500 Sobic006G209500 Sobic004G034400--Sobic006G209500 Sobic004G034400--Sobic009G178600 Sobic001G085500 Sobic001G085500 Sobic004G034400--Sobic001G085500 Sobic001G478300 Sobic001G478300 Sobic004G034400--Sobic001G478300 Sobic002G132300 Sobic002G132300 Sobic004G034400--Sobic002G132300 Sobic004G320000 Sobic004G320000 Sobic004G034400--Sobic004G320000 Sobic010G067700--Sobic008G128600 Sobic010G067700--Sobic009G054700 Sobic001G136900 Sobic001G136900 Sobic010G067700--Sobic001G136900 Sobic010G071200 Sobic010G071200 Sobic010G067700--Sobic010G071200 Sobic002G256300 Sobic002G256300 Sobic010G067700--Sobic002G256300 Sobic010G067700--Sobic001G512900 Sobic010G168600 Sobic010G168600 Sobic010G067700--Sobic010G168600 Sobic010G067700--Sobic001G083600 Sobic003G146900 Sobic003G146900 Sobic010G067700--Sobic003G146900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.