Gene annotation
Transcriptome id Sobic.009G257100.1
Synonym EDA39, Sb09g030680
Functional annotation calmodulin-binding protein, putative, expressed
UniProt C5YX01
Pfam -
Panther DB PTHR31250 PTHR31250:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G33050 : calmodulin-binding family protein
RAP-DB (Rice) LOC_Os01g38980.1 : calmodulin-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a028439 , Zm00025a036808 , Zm00025a038407
Brachypodium KQK08369 , KQK08370
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G095750 - -
2 Sobic.001G161200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.001G044800 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
4 Sobic.001G314300 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
5 Sobic.003G131500 VQ domain containing protein, putative, expressed -
6 Sobic.005G087800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
7 Sobic.002G185200 VQ domain containing protein, putative, expressed -
8 Sobic.003G109832 - -
9 Sobic.002G160600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
10 Sobic.002G233400 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.009G014200 clathrin assembly protein, putative, expressed -
12 Sobic.007G183100 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.006G205200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.007G064800 "Production of (E)-b-caryophyllene, cytoplasm"(PubMedID : 21880075)@Protein terpene synthase 6 (Os)(PubMedID : 27208977)@terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
15 Sobic.001G118900 DUF292 domain containing protein, expressed -
16 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
17 Sobic.007G181701 - -
18 Sobic.009G227800 membrane attack complex component/perforin/complement C9, putative, expressed -
19 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
20 Sobic.003G234800 membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G257100 Sobic009G257100 Sobic001G095750 Sobic001G095750 Sobic009G257100--Sobic001G095750 Sobic001G161200 Sobic001G161200 Sobic009G257100--Sobic001G161200 Sobic001G044800 Sobic001G044800 Sobic009G257100--Sobic001G044800 Sobic001G314300 Sobic001G314300 Sobic009G257100--Sobic001G314300 Sobic003G131500 Sobic003G131500 Sobic009G257100--Sobic003G131500 Sobic005G087800 Sobic005G087800 Sobic009G257100--Sobic005G087800 Sobic002G185200 Sobic002G185200 Sobic009G257100--Sobic002G185200 Sobic003G109832 Sobic003G109832 Sobic009G257100--Sobic003G109832 Sobic002G160600 Sobic002G160600 Sobic009G257100--Sobic002G160600 Sobic001G118900 Sobic001G118900 Sobic001G095750--Sobic001G118900 Sobic001G095750--Sobic003G131500 Sobic002G189000 Sobic002G189000 Sobic001G095750--Sobic002G189000 Sobic001G095750--Sobic001G314300 Sobic002G137800 Sobic002G137800 Sobic001G095750--Sobic002G137800 Sobic006G114200 Sobic006G114200 Sobic001G095750--Sobic006G114200 Sobic003G234800 Sobic003G234800 Sobic001G095750--Sobic003G234800 Sobic001G095750--Sobic005G087800 Sobic001G095750--Sobic001G161200 Sobic001G161200--Sobic001G118900 Sobic006G205200 Sobic006G205200 Sobic001G161200--Sobic006G205200 Sobic002G207300 Sobic002G207300 Sobic001G161200--Sobic002G207300 Sobic004G065900 Sobic004G065900 Sobic001G161200--Sobic004G065900 Sobic001G161200--Sobic003G131500 Sobic001G161200--Sobic001G095750 Sobic001G216300 Sobic001G216300 Sobic001G161200--Sobic001G216300 Sobic002G367900 Sobic002G367900 Sobic001G161200--Sobic002G367900 Sobic001G041500 Sobic001G041500 Sobic001G161200--Sobic001G041500 Sobic007G183100 Sobic007G183100 Sobic001G044800--Sobic007G183100 Sobic003G184765 Sobic003G184765 Sobic001G044800--Sobic003G184765 Sobic005G218500 Sobic005G218500 Sobic001G044800--Sobic005G218500 Sobic001G044800--Sobic002G160600 Sobic003G423200 Sobic003G423200 Sobic001G044800--Sobic003G423200 Sobic001G044800--Sobic003G109832 Sobic001G044800--Sobic001G314300 Sobic003G248901 Sobic003G248901 Sobic001G044800--Sobic003G248901 Sobic010G214200 Sobic010G214200 Sobic001G044800--Sobic010G214200 Sobic001G314300--Sobic006G114200 Sobic001G314300--Sobic001G095750 Sobic001G314300--Sobic003G109832 Sobic009G227800 Sobic009G227800 Sobic001G314300--Sobic009G227800 Sobic001G314700 Sobic001G314700 Sobic001G314300--Sobic001G314700 Sobic004G092000 Sobic004G092000 Sobic001G314300--Sobic004G092000 Sobic010G273700 Sobic010G273700 Sobic001G314300--Sobic010G273700 Sobic001G314300--Sobic002G185200 Sobic003G339900 Sobic003G339900 Sobic001G314300--Sobic003G339900 Sobic001G462800 Sobic001G462800 Sobic003G131500--Sobic001G462800 Sobic010G272101 Sobic010G272101 Sobic003G131500--Sobic010G272101 Sobic003G131500--Sobic001G095750 Sobic010G016500 Sobic010G016500 Sobic003G131500--Sobic010G016500 Sobic001G081600 Sobic001G081600 Sobic003G131500--Sobic001G081600 Sobic002G182800 Sobic002G182800 Sobic003G131500--Sobic002G182800 Sobic006G203000 Sobic006G203000 Sobic003G131500--Sobic006G203000 Sobic009G128300 Sobic009G128300 Sobic003G131500--Sobic009G128300 Sobic004G244300 Sobic004G244300 Sobic003G131500--Sobic004G244300 Sobic003G233900 Sobic003G233900 Sobic005G087800--Sobic003G233900 Sobic004G285100 Sobic004G285100 Sobic005G087800--Sobic004G285100 Sobic005G087800--Sobic002G182800 Sobic005G087800--Sobic002G189000 Sobic004G283300 Sobic004G283300 Sobic005G087800--Sobic004G283300 Sobic004G310600 Sobic004G310600 Sobic005G087800--Sobic004G310600 Sobic003G227600 Sobic003G227600 Sobic005G087800--Sobic003G227600 Sobic005G087800--Sobic009G128300 Sobic009G000700 Sobic009G000700 Sobic005G087800--Sobic009G000700 Sobic004G006500 Sobic004G006500 Sobic002G185200--Sobic004G006500 Sobic002G418900 Sobic002G418900 Sobic002G185200--Sobic002G418900 Sobic002G294600 Sobic002G294600 Sobic002G185200--Sobic002G294600 Sobic002G185200--Sobic004G065900 Sobic002G185200--Sobic001G118900 Sobic006G146500 Sobic006G146500 Sobic002G185200--Sobic006G146500 Sobic007G143400 Sobic007G143400 Sobic002G185200--Sobic007G143400 Sobic002G185200--Sobic006G114200 Sobic004G086800 Sobic004G086800 Sobic002G185200--Sobic004G086800 Sobic003G109832--Sobic010G273700 Sobic003G109832--Sobic001G314300 Sobic003G109832--Sobic009G227800 Sobic003G109832--Sobic001G095750 Sobic003G109832--Sobic004G006500 Sobic003G370400 Sobic003G370400 Sobic003G109832--Sobic003G370400 Sobic003G109832--Sobic003G423200 Sobic003G109832--Sobic002G137800 Sobic003G109832--Sobic002G185200 Sobic007G064800 Sobic007G064800 Sobic002G160600--Sobic007G064800 Sobic006G014700 Sobic006G014700 Sobic002G160600--Sobic006G014700 Sobic002G160600--Sobic005G218500 Sobic002G216500 Sobic002G216500 Sobic002G160600--Sobic002G216500 Sobic001G314800 Sobic001G314800 Sobic002G160600--Sobic001G314800 Sobic008G075400 Sobic008G075400 Sobic002G160600--Sobic008G075400 Sobic004G140000 Sobic004G140000 Sobic002G160600--Sobic004G140000 Sobic006G265000 Sobic006G265000 Sobic002G160600--Sobic006G265000 Sobic002G160600--Sobic007G183100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.