Gene annotation
Transcriptome id Sobic.010G071100.1
Synonym Sb10g006210
Functional annotation expressed protein
UniProt A0A194YIU8
Pfam PF06941
Panther DB PTHR35134 PTHR35134:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009264; deoxyribonucleotide catabolic process GO:00082535'-nucleotidase activity


Orthologs (automatic annotation)
TAIR AT4G33140 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os06g09320.1 : expressed protein
MaizeGDB (Corn) Zm00025a049706
Brachypodium KQK19174
Barley HORVU7Hr1G032240.10 , HORVU7Hr1G032240.11 , HORVU7Hr1G032240.1 , HORVU7Hr1G032240.8 , HORVU7Hr1G032240.9 , HORVU7Hr1G032240.2 , HORVU7Hr1G032240.3 , HORVU7Hr1G032240.6 , HORVU7Hr1G032240.7 , HORVU7Hr1G032240.4 , HORVU7Hr1G032240.5
Wheat TraesCS7D02G157500 , TraesCS7B02G061200 , TraesCS7A02G157000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G071100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G116700 expressed protein -
2 Sobic.004G172500 expressed protein -
3 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
4 Sobic.001G095000 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
5 Sobic.004G198600 cyclin G-associated kinase, putative, expressed K08853: AP2-associated kinase
6 Sobic.001G237600 transcription factor Dp, putative, expressed K04683: transcription factor Dp-1
7 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
8 Sobic.010G186100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.003G032400 - -
10 Sobic.005G150600 expressed protein -
11 Sobic.004G240400 tRNA synthetase, putative, expressed -
12 Sobic.004G209700 FAR1 family protein, expressed -
13 Sobic.005G111700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.003G202600 single myb histone, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.004G320700 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
16 Sobic.002G200000 zinc finger, C3HC4 type, putative, expressed -
17 Sobic.007G076400 expressed protein -
18 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
19 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
20 Sobic.003G329900 FAD dependent oxidoreductase domain containing protein, expressed -


Gene co-expression network
sample Sobic010G071100 Sobic010G071100 Sobic008G116700 Sobic008G116700 Sobic010G071100--Sobic008G116700 Sobic004G172500 Sobic004G172500 Sobic010G071100--Sobic004G172500 Sobic007G087000 Sobic007G087000 Sobic010G071100--Sobic007G087000 Sobic001G095000 Sobic001G095000 Sobic010G071100--Sobic001G095000 Sobic004G198600 Sobic004G198600 Sobic010G071100--Sobic004G198600 Sobic001G237600 Sobic001G237600 Sobic010G071100--Sobic001G237600 Sobic009G107300 Sobic009G107300 Sobic010G071100--Sobic009G107300 Sobic010G186100 Sobic010G186100 Sobic010G071100--Sobic010G186100 Sobic003G032400 Sobic003G032400 Sobic010G071100--Sobic003G032400 Sobic008G116700--Sobic007G087000 Sobic002G200000 Sobic002G200000 Sobic008G116700--Sobic002G200000 Sobic001G114200 Sobic001G114200 Sobic008G116700--Sobic001G114200 Sobic002G079000 Sobic002G079000 Sobic008G116700--Sobic002G079000 Sobic002G076500 Sobic002G076500 Sobic008G116700--Sobic002G076500 Sobic008G116700--Sobic009G107300 Sobic007G076400 Sobic007G076400 Sobic008G116700--Sobic007G076400 Sobic008G069300 Sobic008G069300 Sobic008G116700--Sobic008G069300 Sobic008G116700--Sobic004G198600 Sobic010G244900 Sobic010G244900 Sobic004G172500--Sobic010G244900 Sobic004G172500--Sobic002G076500 Sobic005G150600 Sobic005G150600 Sobic004G172500--Sobic005G150600 Sobic003G363700 Sobic003G363700 Sobic004G172500--Sobic003G363700 Sobic001G030000 Sobic001G030000 Sobic004G172500--Sobic001G030000 Sobic004G172500--Sobic001G237600 Sobic009G228000 Sobic009G228000 Sobic004G172500--Sobic009G228000 Sobic004G213800 Sobic004G213800 Sobic004G172500--Sobic004G213800 Sobic003G272700 Sobic003G272700 Sobic004G172500--Sobic003G272700 Sobic007G087000--Sobic002G079000 Sobic007G087000--Sobic007G076400 Sobic002G306100 Sobic002G306100 Sobic007G087000--Sobic002G306100 Sobic007G087000--Sobic008G116700 Sobic006G250800 Sobic006G250800 Sobic007G087000--Sobic006G250800 Sobic001G014200 Sobic001G014200 Sobic007G087000--Sobic001G014200 Sobic007G087000--Sobic001G237600 Sobic007G172700 Sobic007G172700 Sobic007G087000--Sobic007G172700 Sobic007G087000--Sobic009G107300 Sobic003G202600 Sobic003G202600 Sobic001G095000--Sobic003G202600 Sobic001G095000--Sobic007G087000 Sobic001G095000--Sobic001G237600 Sobic001G095000--Sobic002G079000 Sobic007G032000 Sobic007G032000 Sobic001G095000--Sobic007G032000 Sobic003G302200 Sobic003G302200 Sobic001G095000--Sobic003G302200 Sobic001G095000--Sobic007G076400 Sobic001G188400 Sobic001G188400 Sobic001G095000--Sobic001G188400 Sobic001G095000--Sobic008G116700 Sobic004G198600--Sobic002G079000 Sobic004G240400 Sobic004G240400 Sobic004G198600--Sobic004G240400 Sobic010G068700 Sobic010G068700 Sobic004G198600--Sobic010G068700 Sobic004G198600--Sobic007G087000 Sobic004G198600--Sobic009G107300 Sobic004G198600--Sobic001G014200 Sobic002G355800 Sobic002G355800 Sobic004G198600--Sobic002G355800 Sobic010G169900 Sobic010G169900 Sobic004G198600--Sobic010G169900 Sobic004G198600--Sobic008G116700 Sobic001G237600--Sobic003G363700 Sobic004G320700 Sobic004G320700 Sobic001G237600--Sobic004G320700 Sobic001G237600--Sobic002G079000 Sobic001G237600--Sobic007G087000 Sobic006G039400 Sobic006G039400 Sobic001G237600--Sobic006G039400 Sobic001G237600--Sobic003G202600 Sobic001G237600--Sobic010G244900 Sobic001G237600--Sobic001G095000 Sobic002G292900 Sobic002G292900 Sobic001G237600--Sobic002G292900 Sobic009G107300--Sobic009G228000 Sobic009G107300--Sobic007G087000 Sobic009G107300--Sobic004G240400 Sobic009G107300--Sobic008G116700 Sobic003G043000 Sobic003G043000 Sobic009G107300--Sobic003G043000 Sobic009G107300--Sobic004G198600 Sobic003G120300 Sobic003G120300 Sobic009G107300--Sobic003G120300 Sobic003G181700 Sobic003G181700 Sobic009G107300--Sobic003G181700 Sobic001G156900 Sobic001G156900 Sobic009G107300--Sobic001G156900 Sobic010G186100--Sobic004G320700 Sobic010G186100--Sobic010G244900 Sobic002G031900 Sobic002G031900 Sobic010G186100--Sobic002G031900 Sobic006G032300 Sobic006G032300 Sobic010G186100--Sobic006G032300 Sobic010G186100--Sobic001G237600 Sobic010G186100--Sobic002G292900 Sobic010G186100--Sobic010G071100 Sobic004G209700 Sobic004G209700 Sobic010G186100--Sobic004G209700 Sobic003G329900 Sobic003G329900 Sobic010G186100--Sobic003G329900 Sobic003G032400--Sobic001G095000 Sobic003G032400--Sobic003G202600 Sobic003G032400--Sobic010G071100 Sobic003G032400--Sobic007G076400 Sobic009G140900 Sobic009G140900 Sobic003G032400--Sobic009G140900 Sobic003G032400--Sobic001G237600 Sobic004G054700 Sobic004G054700 Sobic003G032400--Sobic004G054700 Sobic003G032400--Sobic007G087000 Sobic003G032400--Sobic007G032000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.