Gene annotation
Transcriptome id Sobic.010G106300.1
Synonym TSO2, ATTSO2, Sb10g009290
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ribonucleoside-diphosphate reductase small chain, putative, expressed
UniProt C5Z810
Pfam PF00268
Panther DB PTHR23409
NCBI CDD -
KEGG Orthology K10808; ribonucleoside-diphosphate reductase subunit M2
Gene Ontology GO:0009186; deoxyribonucleoside diphosphate metabolic process


Orthologs (automatic annotation)
TAIR AT3G27060 : Ferritin/ribonucleotide reductase-like family protein
RAP-DB (Rice) LOC_Os06g14620.1 : ribonucleoside-diphosphate reductase small chain, putative, expressed
MaizeGDB (Corn) Zm00025a010810 , Zm00025a042711 , Zm00025a050377
Brachypodium KQK18690 , KQK20574
Barley HORVU7Hr1G041710.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
2 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
3 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
4 Sobic.001G537200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
5 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
6 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
7 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
8 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
9 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
10 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
11 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
12 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
13 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
14 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
15 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
16 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
17 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
18 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
19 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
20 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e


Gene co-expression network
sample Sobic010G106300 Sobic010G106300 Sobic001G130301 Sobic001G130301 Sobic010G106300--Sobic001G130301 Sobic003G346600 Sobic003G346600 Sobic010G106300--Sobic003G346600 Sobic010G060500 Sobic010G060500 Sobic010G106300--Sobic010G060500 Sobic001G537200 Sobic001G537200 Sobic010G106300--Sobic001G537200 Sobic007G197800 Sobic007G197800 Sobic010G106300--Sobic007G197800 Sobic004G008400 Sobic004G008400 Sobic010G106300--Sobic004G008400 Sobic006G116700 Sobic006G116700 Sobic010G106300--Sobic006G116700 Sobic006G201500 Sobic006G201500 Sobic010G106300--Sobic006G201500 Sobic003G322400 Sobic003G322400 Sobic010G106300--Sobic003G322400 Sobic009G215200 Sobic009G215200 Sobic001G130301--Sobic009G215200 Sobic001G130301--Sobic007G197800 Sobic001G130301--Sobic006G116700 Sobic001G018900 Sobic001G018900 Sobic001G130301--Sobic001G018900 Sobic001G493001 Sobic001G493001 Sobic001G130301--Sobic001G493001 Sobic001G402050 Sobic001G402050 Sobic001G130301--Sobic001G402050 Sobic009G050300 Sobic009G050300 Sobic001G130301--Sobic009G050300 Sobic002G200600 Sobic002G200600 Sobic001G130301--Sobic002G200600 Sobic001G374700 Sobic001G374700 Sobic001G130301--Sobic001G374700 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic003G346600--Sobic002G081600 Sobic009G166500 Sobic009G166500 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic009G163800 Sobic009G163800 Sobic003G346600--Sobic009G163800 Sobic007G178600 Sobic007G178600 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic006G137100 Sobic006G137100 Sobic003G346600--Sobic006G137100 Sobic010G060500--Sobic003G346600 Sobic010G060500--Sobic006G137100 Sobic010G060500--Sobic004G008400 Sobic010G060500--Sobic009G166500 Sobic010G060500--Sobic009G050300 Sobic010G060500--Sobic007G178600 Sobic002G255300 Sobic002G255300 Sobic010G060500--Sobic002G255300 Sobic006G213000 Sobic006G213000 Sobic010G060500--Sobic006G213000 Sobic010G060500--Sobic009G163800 Sobic001G537200--Sobic009G050300 Sobic001G537200--Sobic001G018900 Sobic001G537200--Sobic007G197800 Sobic002G379500 Sobic002G379500 Sobic001G537200--Sobic002G379500 Sobic001G537200--Sobic009G215200 Sobic007G019000 Sobic007G019000 Sobic001G537200--Sobic007G019000 Sobic001G537200--Sobic006G116700 Sobic001G537200--Sobic001G130301 Sobic001G403500 Sobic001G403500 Sobic001G537200--Sobic001G403500 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic007G197800--Sobic001G402050 Sobic001G016400 Sobic001G016400 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic007G197800--Sobic004G008400 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic004G008400--Sobic002G255300 Sobic004G008400--Sobic007G197800 Sobic003G436700 Sobic003G436700 Sobic004G008400--Sobic003G436700 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900 Sobic002G115000 Sobic002G115000 Sobic006G201500--Sobic002G115000 Sobic001G085400 Sobic001G085400 Sobic006G201500--Sobic001G085400 Sobic009G233400 Sobic009G233400 Sobic006G201500--Sobic009G233400 Sobic010G166100 Sobic010G166100 Sobic006G201500--Sobic010G166100 Sobic006G201500--Sobic007G019000 Sobic010G069400 Sobic010G069400 Sobic006G201500--Sobic010G069400 Sobic001G058900 Sobic001G058900 Sobic006G201500--Sobic001G058900 Sobic008G098800 Sobic008G098800 Sobic006G201500--Sobic008G098800 Sobic003G249700 Sobic003G249700 Sobic006G201500--Sobic003G249700 Sobic003G322400--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic003G322400--Sobic001G091801 Sobic007G212600 Sobic007G212600 Sobic003G322400--Sobic007G212600 Sobic003G322400--Sobic006G116700 Sobic001G054900 Sobic001G054900 Sobic003G322400--Sobic001G054900 Sobic003G408100 Sobic003G408100 Sobic003G322400--Sobic003G408100 Sobic003G322400--Sobic001G374700 Sobic003G322400--Sobic002G200600 Sobic007G184600 Sobic007G184600 Sobic003G322400--Sobic007G184600
Octagon: transcription factors


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