Gene annotation
Transcriptome id Sobic.010G186400.1
Synonym Sb10g023690
Functional annotation Tetratricopeptide repeat (TPR)-like superfamily protein (PubMedID : 26465154)
expressed protein
UniProt C5Z5P4
Pfam -
Panther DB PTHR26312 PTHR26312:SF86
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80130 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os06g40440.1 : expressed protein
MaizeGDB (Corn) Zm00025a051324
Brachypodium KQJ97960 , KQK17745
Barley HORVU7Hr1G090280.2 , HORVU7Hr1G090280.3 , HORVU7Hr1G090280.1 , HORVU1Hr1G050780.1 , HORVU1Hr1G050780.3 , HORVU1Hr1G050780.2
Wheat TraesCS7B02G279400 , TraesCS7D02G374500 , TraesCS7D02G374500 , TraesCS7A02G377700 , TraesCS1A02G194200
Populus -


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cDNA sequences
Sobic.010G186400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G421400 expressed protein -
2 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
3 Sobic.003G360800 expressed protein -
4 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
5 Sobic.008G063200 expressed protein -
6 Sobic.009G141400 transcriptional regulator, putative, expressed -
7 Sobic.001G121100 integral membrane protein, putative, expressed -
8 Sobic.001G161300 mttA/Hcf106 family protein, putative, expressed K03116: sec-independent protein translocase protein TatA
9 Sobic.003G253300 ATP synthase protein I related, putative, expressed K02116: ATP synthase protein I
10 Sobic.007G132500 F-box domain containing protein, expressed -
11 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
12 Sobic.008G063100 thioredoxin, putative, expressed K03671: thioredoxin 1
13 Sobic.002G424100 parvulin-type peptidyl prolyl cis/trans isomerase, putative, expressed -
14 Sobic.001G286600 PAP fibrillin family domain containing protein, expressed -
15 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
16 Sobic.005G021600 expressed protein -
17 Sobic.002G046900 HNH endonuclease domain-containing protein, putative, expressed -
18 Sobic.005G175600 TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed -
19 Sobic.006G214700 APO, putative, expressed -
20 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4


Gene co-expression network
sample Sobic010G186400 Sobic010G186400 Sobic003G421400 Sobic003G421400 Sobic010G186400--Sobic003G421400 Sobic002G386400 Sobic002G386400 Sobic010G186400--Sobic002G386400 Sobic003G360800 Sobic003G360800 Sobic010G186400--Sobic003G360800 Sobic006G110900 Sobic006G110900 Sobic010G186400--Sobic006G110900 Sobic008G063200 Sobic008G063200 Sobic010G186400--Sobic008G063200 Sobic009G141400 Sobic009G141400 Sobic010G186400--Sobic009G141400 Sobic001G121100 Sobic001G121100 Sobic010G186400--Sobic001G121100 Sobic001G161300 Sobic001G161300 Sobic010G186400--Sobic001G161300 Sobic003G253300 Sobic003G253300 Sobic010G186400--Sobic003G253300 Sobic003G254600 Sobic003G254600 Sobic003G421400--Sobic003G254600 Sobic003G421400--Sobic008G063200 Sobic004G343100 Sobic004G343100 Sobic003G421400--Sobic004G343100 Sobic009G034600 Sobic009G034600 Sobic003G421400--Sobic009G034600 Sobic008G063100 Sobic008G063100 Sobic003G421400--Sobic008G063100 Sobic003G421400--Sobic010G186400 Sobic005G021600 Sobic005G021600 Sobic003G421400--Sobic005G021600 Sobic003G421400--Sobic006G110900 Sobic001G286600 Sobic001G286600 Sobic003G421400--Sobic001G286600 Sobic002G038300 Sobic002G038300 Sobic002G386400--Sobic002G038300 Sobic003G208300 Sobic003G208300 Sobic002G386400--Sobic003G208300 Sobic006G197700 Sobic006G197700 Sobic002G386400--Sobic006G197700 Sobic002G386400--Sobic001G161300 Sobic002G163700 Sobic002G163700 Sobic002G386400--Sobic002G163700 Sobic003G330100 Sobic003G330100 Sobic002G386400--Sobic003G330100 Sobic010G028000 Sobic010G028000 Sobic002G386400--Sobic010G028000 Sobic009G234200 Sobic009G234200 Sobic002G386400--Sobic009G234200 Sobic001G388400 Sobic001G388400 Sobic002G386400--Sobic001G388400 Sobic004G006400 Sobic004G006400 Sobic003G360800--Sobic004G006400 Sobic003G360800--Sobic010G186400 Sobic006G226601 Sobic006G226601 Sobic003G360800--Sobic006G226601 Sobic004G269800 Sobic004G269800 Sobic003G360800--Sobic004G269800 Sobic003G360800--Sobic001G286600 Sobic003G328100 Sobic003G328100 Sobic003G360800--Sobic003G328100 Sobic001G118400 Sobic001G118400 Sobic003G360800--Sobic001G118400 Sobic006G155500 Sobic006G155500 Sobic003G360800--Sobic006G155500 Sobic001G276300 Sobic001G276300 Sobic003G360800--Sobic001G276300 Sobic006G110900--Sobic003G253300 Sobic006G110900--Sobic001G286600 Sobic006G110900--Sobic006G155500 Sobic006G214700 Sobic006G214700 Sobic006G110900--Sobic006G214700 Sobic006G110900--Sobic008G063200 Sobic006G110900--Sobic001G118400 Sobic004G224500 Sobic004G224500 Sobic006G110900--Sobic004G224500 Sobic006G110900--Sobic003G328100 Sobic006G050400 Sobic006G050400 Sobic006G110900--Sobic006G050400 Sobic001G450600 Sobic001G450600 Sobic008G063200--Sobic001G450600 Sobic008G063200--Sobic006G110900 Sobic008G063200--Sobic006G214700 Sobic001G006000 Sobic001G006000 Sobic008G063200--Sobic001G006000 Sobic002G102200 Sobic002G102200 Sobic008G063200--Sobic002G102200 Sobic008G063200--Sobic003G253300 Sobic010G076800 Sobic010G076800 Sobic008G063200--Sobic010G076800 Sobic004G333400 Sobic004G333400 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200 Sobic009G141400--Sobic006G214700 Sobic009G141400--Sobic006G110900 Sobic009G141400--Sobic006G155500 Sobic010G035500 Sobic010G035500 Sobic009G141400--Sobic010G035500 Sobic010G269400 Sobic010G269400 Sobic009G141400--Sobic010G269400 Sobic004G324100 Sobic004G324100 Sobic009G141400--Sobic004G324100 Sobic009G141400--Sobic008G063200 Sobic009G141400--Sobic003G253300 Sobic009G141400--Sobic001G286600 Sobic002G366100 Sobic002G366100 Sobic001G121100--Sobic002G366100 Sobic001G525900 Sobic001G525900 Sobic001G121100--Sobic001G525900 Sobic001G321600 Sobic001G321600 Sobic001G121100--Sobic001G321600 Sobic005G175600 Sobic005G175600 Sobic001G121100--Sobic005G175600 Sobic001G414000 Sobic001G414000 Sobic001G121100--Sobic001G414000 Sobic001G030500 Sobic001G030500 Sobic001G121100--Sobic001G030500 Sobic004G068700 Sobic004G068700 Sobic001G121100--Sobic004G068700 Sobic002G287000 Sobic002G287000 Sobic001G121100--Sobic002G287000 Sobic001G121100--Sobic010G186400 Sobic001G161300--Sobic002G038300 Sobic004G007500 Sobic004G007500 Sobic001G161300--Sobic004G007500 Sobic001G161300--Sobic002G386400 Sobic001G161300--Sobic004G068700 Sobic001G276100 Sobic001G276100 Sobic001G161300--Sobic001G276100 Sobic002G226100 Sobic002G226100 Sobic001G161300--Sobic002G226100 Sobic002G384400 Sobic002G384400 Sobic001G161300--Sobic002G384400 Sobic001G161300--Sobic004G343100 Sobic009G000900 Sobic009G000900 Sobic001G161300--Sobic009G000900 Sobic003G253300--Sobic003G342200 Sobic003G253300--Sobic006G110900 Sobic003G253300--Sobic006G155500 Sobic003G253300--Sobic006G050400 Sobic003G253300--Sobic006G214700 Sobic003G284800 Sobic003G284800 Sobic003G253300--Sobic003G284800 Sobic003G253300--Sobic008G063200 Sobic003G253300--Sobic001G118400 Sobic003G253300--Sobic010G076800
Octagon: transcription factors


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