Gene annotation
Transcriptome id Sobic.010G199200.1
Synonym Sb10g024790
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
amino acid transporter, putative, expressed
UniProt C5Z6A3
Pfam PF03222
Panther DB PTHR22950 PTHR22950:SF292
NCBI CDD KOG1305; Amino acid transporter protein
KEGG Orthology K14207; SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
Gene Ontology GO:0003333; amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G30390 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os06g42720.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a051455 , Zm00025a019396
Brachypodium KQK17592
Barley HORVU7Hr1G092550.4 , HORVU7Hr1G092550.1 , HORVU7Hr1G092550.3 , HORVU6Hr1G034900.2 , HORVU6Hr1G034900.3 , HORVU6Hr1G034900.1
Wheat TraesCS7A02G391600 , TraesCS6D02G160400 , TraesCS7D02G387200 , TraesCS6A02G170700 , TraesCS7B02G293500
Populus -


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cDNA sequences
Sobic.010G199200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G425100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
2 Sobic.004G341200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
3 Sobic.006G000300 - -
4 Sobic.002G375800 -(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K00814: GPT, alanine transaminase
5 Sobic.010G161450 - -
6 Sobic.003G047100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K12261: 2-hydroxyacyl-CoA lyase 1
7 Sobic.006G247100 plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
8 Sobic.009G133600 - -
9 Sobic.009G139800 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
10 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
11 Sobic.006G235900 - -
12 Sobic.001G350700 Positive regulator of ABA(PubMedID : 30367619)@CAMK_CAMK_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
13 Sobic.003G070800 gamma-glutamyltranspeptidase 1 precursor, putative, expressed K18592: GGT1_5, gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase
14 Sobic.008G032600 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
15 Sobic.002G155400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed -
16 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
17 Sobic.001G151000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@amino acid permease, putative, expressed K13863: SLC7A1, solute carrier family 7 (cationic amino acid transporter), member 1
18 Sobic.001G109300 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
19 Sobic.006G000100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
20 Sobic.004G106900 "C3 PTPC, root-inducible gene"(PubMedID : 2308851)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase


Gene co-expression network
sample Sobic010G199200 Sobic010G199200 Sobic001G425100 Sobic001G425100 Sobic010G199200--Sobic001G425100 Sobic004G341200 Sobic004G341200 Sobic010G199200--Sobic004G341200 Sobic006G000300 Sobic006G000300 Sobic010G199200--Sobic006G000300 Sobic002G375800 Sobic002G375800 Sobic010G199200--Sobic002G375800 Sobic010G161450 Sobic010G161450 Sobic010G199200--Sobic010G161450 Sobic003G047100 Sobic003G047100 Sobic010G199200--Sobic003G047100 Sobic006G247100 Sobic006G247100 Sobic010G199200--Sobic006G247100 Sobic009G133600 Sobic009G133600 Sobic010G199200--Sobic009G133600 Sobic009G139800 Sobic009G139800 Sobic010G199200--Sobic009G139800 Sobic001G425100--Sobic006G000300 Sobic006G185500 Sobic006G185500 Sobic001G425100--Sobic006G185500 Sobic001G425100--Sobic010G199200 Sobic006G000100 Sobic006G000100 Sobic001G425100--Sobic006G000100 Sobic008G189100 Sobic008G189100 Sobic001G425100--Sobic008G189100 Sobic002G148700 Sobic002G148700 Sobic001G425100--Sobic002G148700 Sobic007G167200 Sobic007G167200 Sobic001G425100--Sobic007G167200 Sobic001G173500 Sobic001G173500 Sobic001G425100--Sobic001G173500 Sobic004G329300 Sobic004G329300 Sobic001G425100--Sobic004G329300 Sobic001G089800 Sobic001G089800 Sobic004G341200--Sobic001G089800 Sobic002G322900 Sobic002G322900 Sobic004G341200--Sobic002G322900 Sobic009G167700 Sobic009G167700 Sobic004G341200--Sobic009G167700 Sobic001G512800 Sobic001G512800 Sobic004G341200--Sobic001G512800 Sobic009G193700 Sobic009G193700 Sobic004G341200--Sobic009G193700 Sobic001G488500 Sobic001G488500 Sobic004G341200--Sobic001G488500 Sobic001G003000 Sobic001G003000 Sobic004G341200--Sobic001G003000 Sobic004G236600 Sobic004G236600 Sobic004G341200--Sobic004G236600 Sobic003G338400 Sobic003G338400 Sobic004G341200--Sobic003G338400 Sobic006G000300--Sobic006G000100 Sobic006G000300--Sobic001G425100 Sobic006G000300--Sobic007G167200 Sobic009G072200 Sobic009G072200 Sobic006G000300--Sobic009G072200 Sobic004G296400 Sobic004G296400 Sobic006G000300--Sobic004G296400 Sobic008G003700 Sobic008G003700 Sobic006G000300--Sobic008G003700 Sobic006G000300--Sobic010G199200 Sobic006G000300--Sobic004G329300 Sobic006G000300--Sobic009G133600 Sobic008G113600 Sobic008G113600 Sobic002G375800--Sobic008G113600 Sobic009G117500 Sobic009G117500 Sobic002G375800--Sobic009G117500 Sobic004G060100 Sobic004G060100 Sobic002G375800--Sobic004G060100 Sobic008G150300 Sobic008G150300 Sobic002G375800--Sobic008G150300 Sobic008G190100 Sobic008G190100 Sobic002G375800--Sobic008G190100 Sobic008G186200 Sobic008G186200 Sobic002G375800--Sobic008G186200 Sobic007G161200 Sobic007G161200 Sobic002G375800--Sobic007G161200 Sobic005G020900 Sobic005G020900 Sobic002G375800--Sobic005G020900 Sobic008G032600 Sobic008G032600 Sobic002G375800--Sobic008G032600 Sobic010G220600 Sobic010G220600 Sobic010G161450--Sobic010G220600 Sobic001G049200 Sobic001G049200 Sobic010G161450--Sobic001G049200 Sobic001G386400 Sobic001G386400 Sobic010G161450--Sobic001G386400 Sobic006G064800 Sobic006G064800 Sobic010G161450--Sobic006G064800 Sobic003G273700 Sobic003G273700 Sobic010G161450--Sobic003G273700 Sobic002G242500 Sobic002G242500 Sobic010G161450--Sobic002G242500 Sobic007G136100 Sobic007G136100 Sobic010G161450--Sobic007G136100 Sobic003G167500 Sobic003G167500 Sobic010G161450--Sobic003G167500 Sobic007G221100 Sobic007G221100 Sobic010G161450--Sobic007G221100 Sobic002G187300 Sobic002G187300 Sobic003G047100--Sobic002G187300 Sobic010G016400 Sobic010G016400 Sobic003G047100--Sobic010G016400 Sobic003G047100--Sobic009G139800 Sobic003G259700 Sobic003G259700 Sobic003G047100--Sobic003G259700 Sobic003G087000 Sobic003G087000 Sobic003G047100--Sobic003G087000 Sobic001G109300 Sobic001G109300 Sobic003G047100--Sobic001G109300 Sobic003G428200 Sobic003G428200 Sobic003G047100--Sobic003G428200 Sobic002G113800 Sobic002G113800 Sobic003G047100--Sobic002G113800 Sobic005G139400 Sobic005G139400 Sobic003G047100--Sobic005G139400 Sobic006G247100--Sobic001G089800 Sobic003G257100 Sobic003G257100 Sobic006G247100--Sobic003G257100 Sobic004G225200 Sobic004G225200 Sobic006G247100--Sobic004G225200 Sobic004G225100 Sobic004G225100 Sobic006G247100--Sobic004G225100 Sobic006G199000 Sobic006G199000 Sobic006G247100--Sobic006G199000 Sobic002G244100 Sobic002G244100 Sobic006G247100--Sobic002G244100 Sobic006G247100--Sobic001G386400 Sobic002G352800 Sobic002G352800 Sobic006G247100--Sobic002G352800 Sobic004G125900 Sobic004G125900 Sobic006G247100--Sobic004G125900 Sobic009G133500 Sobic009G133500 Sobic009G133600--Sobic009G133500 Sobic005G203800 Sobic005G203800 Sobic009G133600--Sobic005G203800 Sobic009G133600--Sobic008G032600 Sobic004G136300 Sobic004G136300 Sobic009G133600--Sobic004G136300 Sobic009G139900 Sobic009G139900 Sobic009G133600--Sobic009G139900 Sobic009G133600--Sobic004G296400 Sobic010G130200 Sobic010G130200 Sobic009G133600--Sobic010G130200 Sobic003G273600 Sobic003G273600 Sobic009G133600--Sobic003G273600 Sobic004G127700 Sobic004G127700 Sobic009G133600--Sobic004G127700 Sobic006G114400 Sobic006G114400 Sobic009G139800--Sobic006G114400 Sobic009G139800--Sobic001G109300 Sobic009G139800--Sobic008G113600 Sobic009G139800--Sobic003G428200 Sobic002G141700 Sobic002G141700 Sobic009G139800--Sobic002G141700 Sobic001G058100 Sobic001G058100 Sobic009G139800--Sobic001G058100 Sobic009G139800--Sobic003G087000 Sobic003G280300 Sobic003G280300 Sobic009G139800--Sobic003G280300 Sobic001G010700 Sobic001G010700 Sobic009G139800--Sobic001G010700
Octagon: transcription factors


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