Gene annotation
Transcriptome id Sobic.001G425100.2,Sobic.001G425100.3,Sobic.001G425100.1
Synonym Sb01g039940, DAR2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
LIM domain-containing protein, putative, expressed
UniProt C5WQ34 , A0A1Z5SAB2 , A0A1B6QP83
Pfam PF00412 PF12315 PF12315 PF00412
Panther DB PTHR24209:SF7 PTHR24209 PTHR24209 PTHR24209:SF7
NCBI CDD KOG1703; Adaptor protein Enigma and related PDZ-LIM proteins
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G39830 : DA1-related protein 2
RAP-DB (Rice) LOC_Os03g16090.1 : LIM domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052782 , Zm00025a009844 , Zm00025a001770
Brachypodium KQK22401 , KQK22400 , KQK22399 , KQK22398
Barley HORVU4Hr1G060560.28 , HORVU4Hr1G060560.29 , HORVU4Hr1G060560.22 , HORVU4Hr1G060560.23 , HORVU4Hr1G060560.20 , HORVU4Hr1G060560.21 , HORVU4Hr1G060560.26 , HORVU4Hr1G060560.27 , HORVU4Hr1G060560.24 , HORVU4Hr1G060560.25 , HORVU4Hr1G060560.40 , HORVU4Hr1G060560.41 , HORVU4Hr1G060560.4 , HORVU4Hr1G060560.13 , HORVU4Hr1G060560.12 , HORVU4Hr1G060560.11 , HORVU4Hr1G060560.10 , HORVU4Hr1G060560.17 , HORVU4Hr1G060560.16 , HORVU4Hr1G060560.15 , HORVU4Hr1G060560.14 , HORVU4Hr1G060560.19 , HORVU4Hr1G060560.18 , HORVU4Hr1G060560.5 , HORVU4Hr1G060560.3 , HORVU4Hr1G060560.2 , HORVU4Hr1G060560.1 , HORVU4Hr1G060560.7 , HORVU4Hr1G060560.6 , HORVU4Hr1G060560.9 , HORVU4Hr1G060560.8 , HORVU4Hr1G060560.35 , HORVU4Hr1G060560.34 , HORVU4Hr1G060560.37 , HORVU4Hr1G060560.36 , HORVU4Hr1G060560.31 , HORVU4Hr1G060560.30 , HORVU4Hr1G060560.33 , HORVU4Hr1G060560.32 , HORVU4Hr1G060560.39 , HORVU4Hr1G060560.38
Wheat TraesCS4B02G210900 , TraesCS4B02G210900 , TraesCS4B02G210900 , TraesCS4D02G211600 , TraesCS4D02G211600 , TraesCS4A02G093500 , TraesCS4A02G093500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G000300 - -
2 Sobic.006G185500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
3 Sobic.010G199200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
4 Sobic.006G000100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
5 Sobic.008G189100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
6 Sobic.002G148700 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heavy metal transport/detoxification protein, putative, expressed -
7 Sobic.007G167200 OsSCP41 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
8 Sobic.001G173500 - -
9 Sobic.004G329300 leucine aminopeptidase, chloroplast precursor, putative, expressed K01255: CARP, leucyl aminopeptidase
10 Sobic.003G203500 "cinnamoyl-CoA reductase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K12355: coniferyl-aldehyde dehydrogenase
11 Sobic.003G244200 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
12 Sobic.009G072200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Myb transcription factor, putative, expressed -
13 Sobic.003G101850 - -
14 Sobic.001G116400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
15 Sobic.001G292000 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
16 Sobic.003G036600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-related transcription activator, putative, expressed -
17 Sobic.001G185500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
18 Sobic.009G133600 - -
19 Sobic.001G235500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
20 Sobic.006G235900 - -


Gene co-expression network
sample Sobic001G425100 Sobic001G425100 Sobic006G000300 Sobic006G000300 Sobic001G425100--Sobic006G000300 Sobic006G185500 Sobic006G185500 Sobic001G425100--Sobic006G185500 Sobic010G199200 Sobic010G199200 Sobic001G425100--Sobic010G199200 Sobic006G000100 Sobic006G000100 Sobic001G425100--Sobic006G000100 Sobic008G189100 Sobic008G189100 Sobic001G425100--Sobic008G189100 Sobic002G148700 Sobic002G148700 Sobic001G425100--Sobic002G148700 Sobic007G167200 Sobic007G167200 Sobic001G425100--Sobic007G167200 Sobic001G173500 Sobic001G173500 Sobic001G425100--Sobic001G173500 Sobic004G329300 Sobic004G329300 Sobic001G425100--Sobic004G329300 Sobic006G000300--Sobic006G000100 Sobic006G000300--Sobic001G425100 Sobic006G000300--Sobic007G167200 Sobic009G072200 Sobic009G072200 Sobic006G000300--Sobic009G072200 Sobic004G296400 Sobic004G296400 Sobic006G000300--Sobic004G296400 Sobic008G003700 Sobic008G003700 Sobic006G000300--Sobic008G003700 Sobic006G000300--Sobic010G199200 Sobic006G000300--Sobic004G329300 Sobic009G133600 Sobic009G133600 Sobic006G000300--Sobic009G133600 Sobic003G051600 Sobic003G051600 Sobic006G185500--Sobic003G051600 Sobic006G185500--Sobic001G425100 Sobic003G101850 Sobic003G101850 Sobic006G185500--Sobic003G101850 Sobic001G462500 Sobic001G462500 Sobic006G185500--Sobic001G462500 Sobic006G214200 Sobic006G214200 Sobic006G185500--Sobic006G214200 Sobic004G351300 Sobic004G351300 Sobic006G185500--Sobic004G351300 Sobic001G116400 Sobic001G116400 Sobic006G185500--Sobic001G116400 Sobic006G185500--Sobic006G000100 Sobic007G186200 Sobic007G186200 Sobic006G185500--Sobic007G186200 Sobic010G199200--Sobic001G425100 Sobic004G341200 Sobic004G341200 Sobic010G199200--Sobic004G341200 Sobic010G199200--Sobic006G000300 Sobic002G375800 Sobic002G375800 Sobic010G199200--Sobic002G375800 Sobic010G161450 Sobic010G161450 Sobic010G199200--Sobic010G161450 Sobic003G047100 Sobic003G047100 Sobic010G199200--Sobic003G047100 Sobic006G247100 Sobic006G247100 Sobic010G199200--Sobic006G247100 Sobic010G199200--Sobic009G133600 Sobic009G139800 Sobic009G139800 Sobic010G199200--Sobic009G139800 Sobic006G000100--Sobic006G000300 Sobic006G000100--Sobic008G003700 Sobic006G000100--Sobic004G329300 Sobic006G002000 Sobic006G002000 Sobic006G000100--Sobic006G002000 Sobic006G000100--Sobic004G296400 Sobic003G242000 Sobic003G242000 Sobic006G000100--Sobic003G242000 Sobic010G072400 Sobic010G072400 Sobic006G000100--Sobic010G072400 Sobic007G004500 Sobic007G004500 Sobic006G000100--Sobic007G004500 Sobic010G220000 Sobic010G220000 Sobic006G000100--Sobic010G220000 Sobic006G175700 Sobic006G175700 Sobic008G189100--Sobic006G175700 Sobic008G030700 Sobic008G030700 Sobic008G189100--Sobic008G030700 Sobic001G249500 Sobic001G249500 Sobic008G189100--Sobic001G249500 Sobic005G190800 Sobic005G190800 Sobic008G189100--Sobic005G190800 Sobic003G007800 Sobic003G007800 Sobic008G189100--Sobic003G007800 Sobic002G278800 Sobic002G278800 Sobic008G189100--Sobic002G278800 Sobic003G131800 Sobic003G131800 Sobic008G189100--Sobic003G131800 Sobic002G278700 Sobic002G278700 Sobic008G189100--Sobic002G278700 Sobic002G128600 Sobic002G128600 Sobic008G189100--Sobic002G128600 Sobic004G170032 Sobic004G170032 Sobic002G148700--Sobic004G170032 Sobic003G036600 Sobic003G036600 Sobic002G148700--Sobic003G036600 Sobic003G198150 Sobic003G198150 Sobic002G148700--Sobic003G198150 Sobic010G260300 Sobic010G260300 Sobic002G148700--Sobic010G260300 Sobic003G198200 Sobic003G198200 Sobic002G148700--Sobic003G198200 Sobic002G110200 Sobic002G110200 Sobic002G148700--Sobic002G110200 Sobic003G233900 Sobic003G233900 Sobic002G148700--Sobic003G233900 Sobic002G189000 Sobic002G189000 Sobic002G148700--Sobic002G189000 Sobic002G013900 Sobic002G013900 Sobic002G148700--Sobic002G013900 Sobic007G167200--Sobic004G296400 Sobic001G312900 Sobic001G312900 Sobic007G167200--Sobic001G312900 Sobic002G116900 Sobic002G116900 Sobic007G167200--Sobic002G116900 Sobic005G157000 Sobic005G157000 Sobic007G167200--Sobic005G157000 Sobic003G273600 Sobic003G273600 Sobic007G167200--Sobic003G273600 Sobic004G004300 Sobic004G004300 Sobic007G167200--Sobic004G004300 Sobic001G043100 Sobic001G043100 Sobic007G167200--Sobic001G043100 Sobic009G219000 Sobic009G219000 Sobic007G167200--Sobic009G219000 Sobic001G193300 Sobic001G193300 Sobic007G167200--Sobic001G193300 Sobic003G327700 Sobic003G327700 Sobic001G173500--Sobic003G327700 Sobic003G244200 Sobic003G244200 Sobic001G173500--Sobic003G244200 Sobic003G125701 Sobic003G125701 Sobic001G173500--Sobic003G125701 Sobic001G222600 Sobic001G222600 Sobic001G173500--Sobic001G222600 Sobic007G069200 Sobic007G069200 Sobic001G173500--Sobic007G069200 Sobic001G147300 Sobic001G147300 Sobic001G173500--Sobic001G147300 Sobic006G084400 Sobic006G084400 Sobic001G173500--Sobic006G084400 Sobic001G012600 Sobic001G012600 Sobic001G173500--Sobic001G012600 Sobic001G012200 Sobic001G012200 Sobic001G173500--Sobic001G012200 Sobic001G282600 Sobic001G282600 Sobic004G329300--Sobic001G282600 Sobic010G169000 Sobic010G169000 Sobic004G329300--Sobic010G169000 Sobic002G266000 Sobic002G266000 Sobic004G329300--Sobic002G266000 Sobic006G104600 Sobic006G104600 Sobic004G329300--Sobic006G104600 Sobic004G225200 Sobic004G225200 Sobic004G329300--Sobic004G225200 Sobic009G193700 Sobic009G193700 Sobic004G329300--Sobic009G193700 Sobic003G257100 Sobic003G257100 Sobic004G329300--Sobic003G257100 Sobic003G322700 Sobic003G322700 Sobic004G329300--Sobic003G322700 Sobic004G329300--Sobic007G004500
Octagon: transcription factors


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