Gene annotation
Transcriptome id Sobic.001G116400.2
Synonym GSR2, ATGSR2, Sb01g010270,GSR2
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
- (PubMedID : 26976818)
glutamine synthetase, catalytic domain containing protein, expressed
UniProt A0A1Z5S5L4
Pfam PF03951 PF00120
Panther DB PTHR20852 PTHR20852:SF58
NCBI CDD -
KEGG Orthology K01915; glnA, glutamine synthetase
Gene Ontology GO:0006807; nitrogen compound metabolic process GO:0006542glutamine biosynthetic process GO:0004356glutamate-ammonia ligase activity


Orthologs (automatic annotation)
TAIR AT1G66200 : glutamine synthase clone F11
RAP-DB (Rice) LOC_Os03g50490.1 : glutamine synthetase, catalytic domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001369 , Zm00025a032673 , Zm00025a007867 , Zm00025a053030 , Zm00025a021951
Brachypodium KQK13627 , KQK22827 , KQJ85049 , KQJ85048 , KQK02034 , KQJ85047
Barley HORVU4Hr1G066860.8 , HORVU4Hr1G007610.2 , HORVU4Hr1G007610.1 , HORVU2Hr1G111300.14 , HORVU2Hr1G111300.10 , HORVU2Hr1G111300.12 , HORVU6Hr1G074030.2 , HORVU6Hr1G074030.3 , HORVU6Hr1G074030.1 , HORVU6Hr1G074030.4 , HORVU2Hr1G111300.7 , HORVU2Hr1G111300.5 , HORVU2Hr1G111300.3 , HORVU2Hr1G111300.1 , HORVU2Hr1G111300.11 , HORVU4Hr1G066860.4 , HORVU4Hr1G066860.5 , HORVU4Hr1G066860.6 , HORVU4Hr1G066860.7 , HORVU4Hr1G066860.1 , HORVU4Hr1G066860.2 , HORVU4Hr1G066860.3
Wheat TraesCS4D02G047400 , TraesCS2D02G500600 , TraesCS6A02G298100 , TraesCS4B02G047400 , TraesCS4B02G240900 , TraesCS4A02G266900 , TraesCS2B02G528300 , TraesCS2B02G528300 , TraesCS4A02G063800 , TraesCS4D02G240700 , TraesCS6A02G298100 , TraesCS6B02G327500 , TraesCS6B02G327500 , TraesCS6B02G327500 , TraesCS2A02G500400 , TraesCS2A02G500400
Populus -


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cDNA sequences
Sobic.001G116400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G189100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.006G185500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
3 Sobic.006G157600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Thireodoxin family protein (Os)(PubMedID : 27208977)@thioredoxin, putative, expressed K03671: thioredoxin 1
4 Sobic.008G190100 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
5 Sobic.006G145500 Beta-glucosidase 16 (Precursor)(PubMedID : 26186930)@Os4bglu16 - monolignol beta-glucoside homologue, expressed K05350: beta-glucosidase
6 Sobic.010G218400 ATP synthase, putative, expressed K02145: ATPeV1A, V-type H+-transporting ATPase subunit A
7 Sobic.001G293300 chaperonin, putative, expressed K04078: groES, chaperonin GroES
8 Sobic.002G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
9 Sobic.004G314500 1-aminocyclopropane-1-carboxylate deaminase, putative, expressed -
10 Sobic.007G146350 - -
11 Sobic.006G147600 L-allo-threonine aldolase, putative, expressed K01620: threonine aldolase
12 Sobic.001G173500 - -
13 Sobic.010G199200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
14 Sobic.001G359200 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
15 Sobic.001G425100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
16 Sobic.003G381900 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed K00991: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
17 Sobic.004G228200 thioredoxin, putative, expressed K03671: thioredoxin 1
18 Sobic.003G244200 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
19 Sobic.003G158300 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
20 Sobic.008G004800 "ferritin-1, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@ferritin-1, chloroplast precursor, putative, expressed K00522: ferritin heavy chain


Gene co-expression network
sample Sobic001G116400 Sobic001G116400 Sobic008G189100 Sobic008G189100 Sobic001G116400--Sobic008G189100 Sobic006G185500 Sobic006G185500 Sobic001G116400--Sobic006G185500 Sobic006G157600 Sobic006G157600 Sobic001G116400--Sobic006G157600 Sobic008G190100 Sobic008G190100 Sobic001G116400--Sobic008G190100 Sobic006G145500 Sobic006G145500 Sobic001G116400--Sobic006G145500 Sobic010G218400 Sobic010G218400 Sobic001G116400--Sobic010G218400 Sobic001G293300 Sobic001G293300 Sobic001G116400--Sobic001G293300 Sobic002G121300 Sobic002G121300 Sobic001G116400--Sobic002G121300 Sobic004G314500 Sobic004G314500 Sobic001G116400--Sobic004G314500 Sobic006G175700 Sobic006G175700 Sobic008G189100--Sobic006G175700 Sobic008G030700 Sobic008G030700 Sobic008G189100--Sobic008G030700 Sobic001G249500 Sobic001G249500 Sobic008G189100--Sobic001G249500 Sobic005G190800 Sobic005G190800 Sobic008G189100--Sobic005G190800 Sobic003G007800 Sobic003G007800 Sobic008G189100--Sobic003G007800 Sobic002G278800 Sobic002G278800 Sobic008G189100--Sobic002G278800 Sobic003G131800 Sobic003G131800 Sobic008G189100--Sobic003G131800 Sobic002G278700 Sobic002G278700 Sobic008G189100--Sobic002G278700 Sobic002G128600 Sobic002G128600 Sobic008G189100--Sobic002G128600 Sobic003G051600 Sobic003G051600 Sobic006G185500--Sobic003G051600 Sobic001G425100 Sobic001G425100 Sobic006G185500--Sobic001G425100 Sobic003G101850 Sobic003G101850 Sobic006G185500--Sobic003G101850 Sobic001G462500 Sobic001G462500 Sobic006G185500--Sobic001G462500 Sobic006G214200 Sobic006G214200 Sobic006G185500--Sobic006G214200 Sobic004G351300 Sobic004G351300 Sobic006G185500--Sobic004G351300 Sobic006G185500--Sobic001G116400 Sobic006G000100 Sobic006G000100 Sobic006G185500--Sobic006G000100 Sobic007G186200 Sobic007G186200 Sobic006G185500--Sobic007G186200 Sobic010G205200 Sobic010G205200 Sobic006G157600--Sobic010G205200 Sobic006G028900 Sobic006G028900 Sobic006G157600--Sobic006G028900 Sobic001G130000 Sobic001G130000 Sobic006G157600--Sobic001G130000 Sobic001G474500 Sobic001G474500 Sobic006G157600--Sobic001G474500 Sobic009G034700 Sobic009G034700 Sobic006G157600--Sobic009G034700 Sobic006G028100 Sobic006G028100 Sobic006G157600--Sobic006G028100 Sobic001G069900 Sobic001G069900 Sobic006G157600--Sobic001G069900 Sobic001G274800 Sobic001G274800 Sobic006G157600--Sobic001G274800 Sobic001G301700 Sobic001G301700 Sobic006G157600--Sobic001G301700 Sobic006G213400 Sobic006G213400 Sobic008G190100--Sobic006G213400 Sobic004G060100 Sobic004G060100 Sobic008G190100--Sobic004G060100 Sobic006G147600 Sobic006G147600 Sobic008G190100--Sobic006G147600 Sobic002G231500 Sobic002G231500 Sobic008G190100--Sobic002G231500 Sobic004G275600 Sobic004G275600 Sobic008G190100--Sobic004G275600 Sobic002G375800 Sobic002G375800 Sobic008G190100--Sobic002G375800 Sobic007G161200 Sobic007G161200 Sobic008G190100--Sobic007G161200 Sobic002G073700 Sobic002G073700 Sobic008G190100--Sobic002G073700 Sobic006G237000 Sobic006G237000 Sobic008G190100--Sobic006G237000 Sobic004G036100 Sobic004G036100 Sobic006G145500--Sobic004G036100 Sobic003G383600 Sobic003G383600 Sobic006G145500--Sobic003G383600 Sobic007G170800 Sobic007G170800 Sobic006G145500--Sobic007G170800 Sobic004G044200 Sobic004G044200 Sobic006G145500--Sobic004G044200 Sobic004G038300 Sobic004G038300 Sobic006G145500--Sobic004G038300 Sobic008G163200 Sobic008G163200 Sobic006G145500--Sobic008G163200 Sobic001G255300 Sobic001G255300 Sobic006G145500--Sobic001G255300 Sobic009G001500 Sobic009G001500 Sobic006G145500--Sobic009G001500 Sobic003G068300 Sobic003G068300 Sobic006G145500--Sobic003G068300 Sobic001G435400 Sobic001G435400 Sobic010G218400--Sobic001G435400 Sobic010G218400--Sobic004G060100 Sobic008G021200 Sobic008G021200 Sobic010G218400--Sobic008G021200 Sobic007G162100 Sobic007G162100 Sobic010G218400--Sobic007G162100 Sobic005G018800 Sobic005G018800 Sobic010G218400--Sobic005G018800 Sobic002G426300 Sobic002G426300 Sobic010G218400--Sobic002G426300 Sobic006G260500 Sobic006G260500 Sobic010G218400--Sobic006G260500 Sobic006G077300 Sobic006G077300 Sobic010G218400--Sobic006G077300 Sobic009G243800 Sobic009G243800 Sobic010G218400--Sobic009G243800 Sobic001G433100 Sobic001G433100 Sobic001G293300--Sobic001G433100 Sobic007G126900 Sobic007G126900 Sobic001G293300--Sobic007G126900 Sobic004G214400 Sobic004G214400 Sobic001G293300--Sobic004G214400 Sobic002G156100 Sobic002G156100 Sobic001G293300--Sobic002G156100 Sobic003G298400 Sobic003G298400 Sobic001G293300--Sobic003G298400 Sobic006G021800 Sobic006G021800 Sobic001G293300--Sobic006G021800 Sobic001G445200 Sobic001G445200 Sobic001G293300--Sobic001G445200 Sobic001G382800 Sobic001G382800 Sobic001G293300--Sobic001G382800 Sobic008G090900 Sobic008G090900 Sobic001G293300--Sobic008G090900 Sobic003G260900 Sobic003G260900 Sobic002G121300--Sobic003G260900 Sobic001G295300 Sobic001G295300 Sobic002G121300--Sobic001G295300 Sobic003G085000 Sobic003G085000 Sobic002G121300--Sobic003G085000 Sobic004G228200 Sobic004G228200 Sobic002G121300--Sobic004G228200 Sobic007G208300 Sobic007G208300 Sobic002G121300--Sobic007G208300 Sobic002G121300--Sobic006G145500 Sobic002G121300--Sobic008G090900 Sobic008G067100 Sobic008G067100 Sobic002G121300--Sobic008G067100 Sobic009G093900 Sobic009G093900 Sobic002G121300--Sobic009G093900 Sobic001G067300 Sobic001G067300 Sobic004G314500--Sobic001G067300 Sobic009G124000 Sobic009G124000 Sobic004G314500--Sobic009G124000 Sobic001G380500 Sobic001G380500 Sobic004G314500--Sobic001G380500 Sobic009G029700 Sobic009G029700 Sobic004G314500--Sobic009G029700 Sobic009G093200 Sobic009G093200 Sobic004G314500--Sobic009G093200 Sobic005G140500 Sobic005G140500 Sobic004G314500--Sobic005G140500 Sobic003G309300 Sobic003G309300 Sobic004G314500--Sobic003G309300 Sobic002G301200 Sobic002G301200 Sobic004G314500--Sobic002G301200 Sobic001G486700 Sobic001G486700 Sobic004G314500--Sobic001G486700
Octagon: transcription factors


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