Gene annotation
Transcriptome id Sobic.006G000100.1
Synonym ACO3
Functional annotation aconitate hydratase protein, putative, expressed
UniProt C5YB69
Pfam PF00694 PF00330
Panther DB PTHR11670 PTHR11670:SF37
NCBI CDD -
KEGG Orthology K01681; ACO, aconitate hydratase
Gene Ontology GO:0008152; metabolic process


Orthologs (automatic annotation)
TAIR AT2G05710 : aconitase 3
RAP-DB (Rice) LOC_Os08g09200.1 : aconitate hydratase protein, putative, expressed
MaizeGDB (Corn) Zm00025a012160 , Zm00025a055536 , Zm00025a029963
Brachypodium KQJ95070
Barley HORVU6Hr1G091950.10 , HORVU6Hr1G091950.5 , HORVU6Hr1G091950.6 , HORVU6Hr1G091950.4 , HORVU6Hr1G091950.7 , HORVU6Hr1G091950.1 , HORVU6Hr1G091950.2 , HORVU6Hr1G091950.3 , HORVU6Hr1G091950.8 , HORVU6Hr1G091950.9
Wheat TraesCS6B02G440200 , TraesCS6A02G400000 , TraesCS6D02G384200 , TraesCS6D02G384200
Populus -


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cDNA sequences
Sobic.006G000100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G000300 - -
2 Sobic.008G003700 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
3 Sobic.004G329300 leucine aminopeptidase, chloroplast precursor, putative, expressed K01255: CARP, leucyl aminopeptidase
4 Sobic.006G002000 phosphoglycerate mutase, putative, expressed -
5 Sobic.004G296400 amino acid permease, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
6 Sobic.003G242000 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
7 Sobic.010G072400 SAC domain containing protein, putative, expressed -
8 Sobic.007G004500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
9 Sobic.010G220000 MYB family transcription factor, putative, expressed -
10 Sobic.001G350700 Positive regulator of ABA(PubMedID : 30367619)@CAMK_CAMK_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
11 Sobic.002G147600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
12 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
13 Sobic.001G481900 SAC domain containing protein, putative, expressed -
14 Sobic.005G003300 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
15 Sobic.010G169000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Multi-drugresistance-associated protein 6(PubMedID : 26320239)@ABC transporter, ATP-binding protein, putative, expressed -
16 Sobic.001G305500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G522100 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
18 Sobic.007G075500 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
19 Sobic.001G462500 natural resistance-associated macrophage protein, putative, expressed K12347: SLC11A1, natural resistance-associated macrophage protein 1
20 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G000100 Sobic006G000100 Sobic006G000300 Sobic006G000300 Sobic006G000100--Sobic006G000300 Sobic008G003700 Sobic008G003700 Sobic006G000100--Sobic008G003700 Sobic004G329300 Sobic004G329300 Sobic006G000100--Sobic004G329300 Sobic006G002000 Sobic006G002000 Sobic006G000100--Sobic006G002000 Sobic004G296400 Sobic004G296400 Sobic006G000100--Sobic004G296400 Sobic003G242000 Sobic003G242000 Sobic006G000100--Sobic003G242000 Sobic010G072400 Sobic010G072400 Sobic006G000100--Sobic010G072400 Sobic007G004500 Sobic007G004500 Sobic006G000100--Sobic007G004500 Sobic010G220000 Sobic010G220000 Sobic006G000100--Sobic010G220000 Sobic006G000300--Sobic006G000100 Sobic001G425100 Sobic001G425100 Sobic006G000300--Sobic001G425100 Sobic007G167200 Sobic007G167200 Sobic006G000300--Sobic007G167200 Sobic009G072200 Sobic009G072200 Sobic006G000300--Sobic009G072200 Sobic006G000300--Sobic004G296400 Sobic006G000300--Sobic008G003700 Sobic010G199200 Sobic010G199200 Sobic006G000300--Sobic010G199200 Sobic006G000300--Sobic004G329300 Sobic009G133600 Sobic009G133600 Sobic006G000300--Sobic009G133600 Sobic005G003300 Sobic005G003300 Sobic008G003700--Sobic005G003300 Sobic004G344901 Sobic004G344901 Sobic008G003700--Sobic004G344901 Sobic007G075500 Sobic007G075500 Sobic008G003700--Sobic007G075500 Sobic001G404600 Sobic001G404600 Sobic008G003700--Sobic001G404600 Sobic008G124800 Sobic008G124800 Sobic008G003700--Sobic008G124800 Sobic003G029600 Sobic003G029600 Sobic008G003700--Sobic003G029600 Sobic003G337300 Sobic003G337300 Sobic008G003700--Sobic003G337300 Sobic004G261600 Sobic004G261600 Sobic008G003700--Sobic004G261600 Sobic007G054800 Sobic007G054800 Sobic008G003700--Sobic007G054800 Sobic001G282600 Sobic001G282600 Sobic004G329300--Sobic001G282600 Sobic010G169000 Sobic010G169000 Sobic004G329300--Sobic010G169000 Sobic002G266000 Sobic002G266000 Sobic004G329300--Sobic002G266000 Sobic006G104600 Sobic006G104600 Sobic004G329300--Sobic006G104600 Sobic004G225200 Sobic004G225200 Sobic004G329300--Sobic004G225200 Sobic009G193700 Sobic009G193700 Sobic004G329300--Sobic009G193700 Sobic003G257100 Sobic003G257100 Sobic004G329300--Sobic003G257100 Sobic003G322700 Sobic003G322700 Sobic004G329300--Sobic003G322700 Sobic004G329300--Sobic007G004500 Sobic003G365300 Sobic003G365300 Sobic006G002000--Sobic003G365300 Sobic010G139600 Sobic010G139600 Sobic006G002000--Sobic010G139600 Sobic007G133700 Sobic007G133700 Sobic006G002000--Sobic007G133700 Sobic003G006300 Sobic003G006300 Sobic006G002000--Sobic003G006300 Sobic008G098900 Sobic008G098900 Sobic006G002000--Sobic008G098900 Sobic007G075400 Sobic007G075400 Sobic006G002000--Sobic007G075400 Sobic006G002000--Sobic010G072400 Sobic006G087700 Sobic006G087700 Sobic006G002000--Sobic006G087700 Sobic003G198800 Sobic003G198800 Sobic006G002000--Sobic003G198800 Sobic003G233600 Sobic003G233600 Sobic004G296400--Sobic003G233600 Sobic003G169600 Sobic003G169600 Sobic004G296400--Sobic003G169600 Sobic010G138000 Sobic010G138000 Sobic004G296400--Sobic010G138000 Sobic001G085300 Sobic001G085300 Sobic004G296400--Sobic001G085300 Sobic002G116900 Sobic002G116900 Sobic004G296400--Sobic002G116900 Sobic002G166300 Sobic002G166300 Sobic004G296400--Sobic002G166300 Sobic001G390800 Sobic001G390800 Sobic004G296400--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic004G296400--Sobic001G124200 Sobic004G040900 Sobic004G040900 Sobic004G296400--Sobic004G040900 Sobic003G242000--Sobic003G198800 Sobic002G262300 Sobic002G262300 Sobic003G242000--Sobic002G262300 Sobic003G115900 Sobic003G115900 Sobic003G242000--Sobic003G115900 Sobic002G383600 Sobic002G383600 Sobic003G242000--Sobic002G383600 Sobic001G064200 Sobic001G064200 Sobic003G242000--Sobic001G064200 Sobic008G152600 Sobic008G152600 Sobic003G242000--Sobic008G152600 Sobic001G409300 Sobic001G409300 Sobic003G242000--Sobic001G409300 Sobic008G059100 Sobic008G059100 Sobic003G242000--Sobic008G059100 Sobic006G002300 Sobic006G002300 Sobic003G242000--Sobic006G002300 Sobic007G172200 Sobic007G172200 Sobic010G072400--Sobic007G172200 Sobic001G217400 Sobic001G217400 Sobic010G072400--Sobic001G217400 Sobic001G043100 Sobic001G043100 Sobic010G072400--Sobic001G043100 Sobic010G072400--Sobic007G133700 Sobic001G370900 Sobic001G370900 Sobic010G072400--Sobic001G370900 Sobic002G042600 Sobic002G042600 Sobic010G072400--Sobic002G042600 Sobic006G126500 Sobic006G126500 Sobic010G072400--Sobic006G126500 Sobic006G077300 Sobic006G077300 Sobic010G072400--Sobic006G077300 Sobic010G072400--Sobic003G198800 Sobic007G004500--Sobic002G266000 Sobic002G430000 Sobic002G430000 Sobic007G004500--Sobic002G430000 Sobic007G004500--Sobic001G085300 Sobic007G004500--Sobic001G390800 Sobic001G016700 Sobic001G016700 Sobic007G004500--Sobic001G016700 Sobic007G004500--Sobic003G322700 Sobic007G004500--Sobic010G139600 Sobic004G065000 Sobic004G065000 Sobic007G004500--Sobic004G065000 Sobic009G133500 Sobic009G133500 Sobic007G004500--Sobic009G133500 Sobic010G220000--Sobic008G059100 Sobic001G462500 Sobic001G462500 Sobic010G220000--Sobic001G462500 Sobic002G187700 Sobic002G187700 Sobic010G220000--Sobic002G187700 Sobic003G126300 Sobic003G126300 Sobic010G220000--Sobic003G126300 Sobic010G220000--Sobic002G266000 Sobic001G481900 Sobic001G481900 Sobic010G220000--Sobic001G481900 Sobic004G233200 Sobic004G233200 Sobic010G220000--Sobic004G233200 Sobic010G220000--Sobic001G409300 Sobic010G220000--Sobic006G087700
Octagon: transcription factors


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