Gene annotation
Transcriptome id Sobic.004G238600.1
Synonym Sb04g028060, AtSS2, SS2
Functional annotation starch synthase, putative, expressed
UniProt A5Y3W7 , B2Z9Y0 , C5XYT7 , A5Y3W2
Pfam PF00534 PF08323
Panther DB PTHR12526 PTHR12526:SF371
NCBI CDD -
KEGG Orthology K00703; starch synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01180 : starch synthase 2
RAP-DB (Rice) LOC_Os02g51070.1 : starch synthase, putative, expressed
MaizeGDB (Corn) Zm00025a042604 , Zm00025a033208 , Zm00025a022028
Brachypodium KQK18856 , KQK01950
Barley HORVU7Hr1G038420.8 , HORVU7Hr1G038420.9 , HORVU7Hr1G038420.1 , HORVU7Hr1G038420.2 , HORVU7Hr1G038420.3 , HORVU7Hr1G038420.4 , HORVU7Hr1G038420.5 , HORVU7Hr1G038420.6 , HORVU6Hr1G075950.9 , HORVU6Hr1G075950.6 , HORVU6Hr1G075950.7 , HORVU6Hr1G075950.4 , HORVU6Hr1G075950.5 , HORVU6Hr1G075950.2 , HORVU6Hr1G075950.3 , HORVU6Hr1G075950.1 , HORVU6Hr1G075950.14 , HORVU6Hr1G075950.10 , HORVU6Hr1G075950.11 , HORVU6Hr1G075950.12 , HORVU6Hr1G075950.13 , HORVU7Hr1G038420.10 , HORVU6Hr1G075950.8
Wheat TraesCS6A02G307800 , TraesCS7D02G190100 , TraesCS6D02G287000 , TraesCS7B02G093800 , TraesCS7A02G189000 , TraesCS6B02G336400 , TraesCS7B02G093800
Populus -


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cDNA sequences
Sobic.004G238600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G053200 fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
2 Sobic.004G283100 expressed protein -
3 Sobic.004G305800 expressed protein -
4 Sobic.003G370000 chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
5 Sobic.002G370600 - -
6 Sobic.007G161500 PGR5, putative, expressed -
7 Sobic.001G329400 DUF1230 domain containing protein, expressed -
8 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
9 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
10 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
11 Sobic.003G234200 carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
12 Sobic.005G056400 fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
13 Sobic.010G201700 GA16396-PA, putative, expressed -
14 Sobic.004G268000 soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
15 Sobic.003G431900 expressed protein K07562: nonsense-mediated mRNA decay protein 3
16 Sobic.009G043000 thioredoxin, putative, expressed -
17 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
18 Sobic.001G020100 expressed protein -
19 Sobic.004G035500 citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
20 Sobic.005G165500 OsSub17 - Putative Subtilisin homologue, expressed -


Gene co-expression network
sample Sobic004G238600 Sobic004G238600 Sobic008G053200 Sobic008G053200 Sobic004G238600--Sobic008G053200 Sobic004G283100 Sobic004G283100 Sobic004G238600--Sobic004G283100 Sobic004G305800 Sobic004G305800 Sobic004G238600--Sobic004G305800 Sobic003G370000 Sobic003G370000 Sobic004G238600--Sobic003G370000 Sobic002G370600 Sobic002G370600 Sobic004G238600--Sobic002G370600 Sobic007G161500 Sobic007G161500 Sobic004G238600--Sobic007G161500 Sobic001G329400 Sobic001G329400 Sobic004G238600--Sobic001G329400 Sobic004G272100 Sobic004G272100 Sobic004G238600--Sobic004G272100 Sobic001G519800 Sobic001G519800 Sobic004G238600--Sobic001G519800 Sobic003G431900 Sobic003G431900 Sobic008G053200--Sobic003G431900 Sobic008G053200--Sobic001G519800 Sobic003G234200 Sobic003G234200 Sobic008G053200--Sobic003G234200 Sobic002G036000 Sobic002G036000 Sobic008G053200--Sobic002G036000 Sobic008G053200--Sobic004G238600 Sobic008G053200--Sobic004G283100 Sobic008G053200--Sobic004G272100 Sobic004G308700 Sobic004G308700 Sobic008G053200--Sobic004G308700 Sobic005G089600 Sobic005G089600 Sobic008G053200--Sobic005G089600 Sobic004G283100--Sobic004G272100 Sobic004G283100--Sobic008G053200 Sobic004G283100--Sobic004G305800 Sobic004G283100--Sobic004G238600 Sobic010G201700 Sobic010G201700 Sobic004G283100--Sobic010G201700 Sobic004G283100--Sobic001G329400 Sobic004G283100--Sobic002G370600 Sobic009G043000 Sobic009G043000 Sobic004G283100--Sobic009G043000 Sobic009G129300 Sobic009G129300 Sobic004G283100--Sobic009G129300 Sobic004G305800--Sobic002G370600 Sobic001G491000 Sobic001G491000 Sobic004G305800--Sobic001G491000 Sobic005G056400 Sobic005G056400 Sobic004G305800--Sobic005G056400 Sobic004G305800--Sobic009G129300 Sobic004G268000 Sobic004G268000 Sobic004G305800--Sobic004G268000 Sobic004G305800--Sobic010G201700 Sobic004G305800--Sobic007G161500 Sobic004G305800--Sobic003G431900 Sobic006G238200 Sobic006G238200 Sobic004G305800--Sobic006G238200 Sobic003G370000--Sobic007G161500 Sobic001G289500 Sobic001G289500 Sobic003G370000--Sobic001G289500 Sobic003G370000--Sobic005G056400 Sobic003G370000--Sobic002G370600 Sobic002G314300 Sobic002G314300 Sobic003G370000--Sobic002G314300 Sobic003G370000--Sobic004G305800 Sobic001G020100 Sobic001G020100 Sobic003G370000--Sobic001G020100 Sobic003G370000--Sobic004G238600 Sobic001G076900 Sobic001G076900 Sobic003G370000--Sobic001G076900 Sobic002G370600--Sobic004G305800 Sobic002G370600--Sobic001G491000 Sobic010G181300 Sobic010G181300 Sobic002G370600--Sobic010G181300 Sobic002G370600--Sobic006G238200 Sobic010G245200 Sobic010G245200 Sobic002G370600--Sobic010G245200 Sobic003G431700 Sobic003G431700 Sobic002G370600--Sobic003G431700 Sobic002G370600--Sobic001G289500 Sobic002G370600--Sobic003G370000 Sobic002G370600--Sobic009G043000 Sobic007G161500--Sobic005G056400 Sobic003G127800 Sobic003G127800 Sobic007G161500--Sobic003G127800 Sobic010G188300 Sobic010G188300 Sobic007G161500--Sobic010G188300 Sobic007G161500--Sobic001G329400 Sobic007G161500--Sobic003G370000 Sobic007G161500--Sobic001G491000 Sobic007G161500--Sobic001G289500 Sobic007G161500--Sobic004G305800 Sobic003G024300 Sobic003G024300 Sobic007G161500--Sobic003G024300 Sobic001G329400--Sobic003G024300 Sobic001G329400--Sobic007G161500 Sobic006G244000 Sobic006G244000 Sobic001G329400--Sobic006G244000 Sobic001G329400--Sobic003G127800 Sobic001G329400--Sobic009G129300 Sobic007G140800 Sobic007G140800 Sobic001G329400--Sobic007G140800 Sobic001G329400--Sobic004G283100 Sobic001G329400--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic001G329400--Sobic009G104800 Sobic004G272100--Sobic004G308700 Sobic004G272100--Sobic010G201700 Sobic004G272100--Sobic001G519800 Sobic002G051100 Sobic002G051100 Sobic004G272100--Sobic002G051100 Sobic003G002300 Sobic003G002300 Sobic004G272100--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic004G272100--Sobic008G102000 Sobic004G272100--Sobic009G043000 Sobic001G102800 Sobic001G102800 Sobic004G272100--Sobic001G102800 Sobic008G066100 Sobic008G066100 Sobic004G272100--Sobic008G066100 Sobic001G519800--Sobic004G272100 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic001G519800--Sobic002G051100 Sobic001G519800--Sobic003G431700 Sobic001G519800--Sobic010G201700 Sobic001G519800--Sobic004G308700 Sobic007G004800 Sobic007G004800 Sobic001G519800--Sobic007G004800 Sobic001G519800--Sobic008G053200
Octagon: transcription factors


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