Gene annotation
Transcriptome id Sobic.001G048900.2,Sobic.001G048900.1,Sobic.001G048900.4,Sobic.001G048900.3
Synonym Sb01g004490
Functional annotation EF hand family protein, putative, expressed
UniProt A0A1B6QHE7 , C5WW71 , A0A1B6QHC5 , A0A1B6QHC4
Pfam -
Panther DB PTHR34574 PTHR34574:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38810 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os10g09850.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a017981
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G048900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G127800 nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
2 Sobic.002G020900 GCRP5 - Glycine and cysteine rich family protein precursor, expressed -
3 Sobic.007G152800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Glutamate decarboxylase("PubMedID : 26759170,PubMedID : 24597475")@decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
4 Sobic.005G121200 "similar to HVA22-like protein e, putative, expressed"(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
5 Sobic.001G409400 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@OsRCI2-5 - Putative low temperature and salt responsive protein, expressed -
6 Sobic.010G165200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.004G101400 Up-reguralion under drought(PubMedID : 24916767)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
8 Sobic.001G381700 expressed protein -
9 Sobic.006G216300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.003G244100 "ABA-Responsive Element (ABRE) -binding factor BZ-1 basic-leucine zipper, maped into a stay green QTL (QSTG12_3"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@transcription factor, putative, expressed K09060: plant G-box-binding factor
11 Sobic.002G337800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.004G047700 expressed protein -
13 Sobic.003G105700 stress responsive protein, putative, expressed -
14 Sobic.003G422200 recA protein, expressed -
15 Sobic.009G046600 stress-related protein, putative, expressed -
16 Sobic.004G139100 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
17 Sobic.010G164400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
18 Sobic.002G389100 cytochrome P450 72A1, putative, expressed -
19 Sobic.001G012800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulatory protein, putative, expressed -
20 Sobic.006G138200 nodulin, putative, expressed -


Gene co-expression network
sample Sobic001G048900 Sobic001G048900 Sobic001G127800 Sobic001G127800 Sobic001G048900--Sobic001G127800 Sobic002G020900 Sobic002G020900 Sobic001G048900--Sobic002G020900 Sobic007G152800 Sobic007G152800 Sobic001G048900--Sobic007G152800 Sobic005G121200 Sobic005G121200 Sobic001G048900--Sobic005G121200 Sobic001G409400 Sobic001G409400 Sobic001G048900--Sobic001G409400 Sobic010G165200 Sobic010G165200 Sobic001G048900--Sobic010G165200 Sobic004G101400 Sobic004G101400 Sobic001G048900--Sobic004G101400 Sobic001G381700 Sobic001G381700 Sobic001G048900--Sobic001G381700 Sobic006G216300 Sobic006G216300 Sobic001G048900--Sobic006G216300 Sobic001G127800--Sobic005G121200 Sobic001G127800--Sobic010G165200 Sobic001G127800--Sobic007G152800 Sobic002G337800 Sobic002G337800 Sobic001G127800--Sobic002G337800 Sobic009G072200 Sobic009G072200 Sobic001G127800--Sobic009G072200 Sobic009G073000 Sobic009G073000 Sobic001G127800--Sobic009G073000 Sobic001G342600 Sobic001G342600 Sobic001G127800--Sobic001G342600 Sobic006G064800 Sobic006G064800 Sobic001G127800--Sobic006G064800 Sobic003G209600 Sobic003G209600 Sobic001G127800--Sobic003G209600 Sobic010G236500 Sobic010G236500 Sobic002G020900--Sobic010G236500 Sobic002G292600 Sobic002G292600 Sobic002G020900--Sobic002G292600 Sobic003G414600 Sobic003G414600 Sobic002G020900--Sobic003G414600 Sobic004G145200 Sobic004G145200 Sobic002G020900--Sobic004G145200 Sobic009G241700 Sobic009G241700 Sobic002G020900--Sobic009G241700 Sobic001G012800 Sobic001G012800 Sobic002G020900--Sobic001G012800 Sobic009G213700 Sobic009G213700 Sobic002G020900--Sobic009G213700 Sobic005G195600 Sobic005G195600 Sobic002G020900--Sobic005G195600 Sobic007G225300 Sobic007G225300 Sobic002G020900--Sobic007G225300 Sobic007G152800--Sobic010G165200 Sobic007G152800--Sobic005G121200 Sobic007G152800--Sobic001G127800 Sobic007G152800--Sobic001G048900 Sobic002G359000 Sobic002G359000 Sobic007G152800--Sobic002G359000 Sobic008G087500 Sobic008G087500 Sobic007G152800--Sobic008G087500 Sobic003G244100 Sobic003G244100 Sobic007G152800--Sobic003G244100 Sobic007G152800--Sobic009G072200 Sobic002G173800 Sobic002G173800 Sobic007G152800--Sobic002G173800 Sobic005G121200--Sobic001G127800 Sobic001G460300 Sobic001G460300 Sobic005G121200--Sobic001G460300 Sobic005G121200--Sobic002G337800 Sobic003G278700 Sobic003G278700 Sobic005G121200--Sobic003G278700 Sobic009G030200 Sobic009G030200 Sobic005G121200--Sobic009G030200 Sobic001G396400 Sobic001G396400 Sobic005G121200--Sobic001G396400 Sobic003G198200 Sobic003G198200 Sobic005G121200--Sobic003G198200 Sobic005G121200--Sobic007G152800 Sobic003G198150 Sobic003G198150 Sobic005G121200--Sobic003G198150 Sobic009G046200 Sobic009G046200 Sobic001G409400--Sobic009G046200 Sobic004G308300 Sobic004G308300 Sobic001G409400--Sobic004G308300 Sobic007G164500 Sobic007G164500 Sobic001G409400--Sobic007G164500 Sobic001G409400--Sobic003G244100 Sobic001G323600 Sobic001G323600 Sobic001G409400--Sobic001G323600 Sobic010G070750 Sobic010G070750 Sobic001G409400--Sobic010G070750 Sobic001G373600 Sobic001G373600 Sobic001G409400--Sobic001G373600 Sobic003G024600 Sobic003G024600 Sobic001G409400--Sobic003G024600 Sobic002G097000 Sobic002G097000 Sobic001G409400--Sobic002G097000 Sobic010G165200--Sobic001G127800 Sobic010G165200--Sobic007G152800 Sobic010G165200--Sobic009G072200 Sobic010G165200--Sobic005G121200 Sobic004G333100 Sobic004G333100 Sobic010G165200--Sobic004G333100 Sobic001G132800 Sobic001G132800 Sobic010G165200--Sobic001G132800 Sobic007G054500 Sobic007G054500 Sobic010G165200--Sobic007G054500 Sobic010G165200--Sobic001G048900 Sobic010G165200--Sobic006G064800 Sobic004G101400--Sobic001G409400 Sobic002G107400 Sobic002G107400 Sobic004G101400--Sobic002G107400 Sobic004G101400--Sobic009G046200 Sobic006G104000 Sobic006G104000 Sobic004G101400--Sobic006G104000 Sobic009G015500 Sobic009G015500 Sobic004G101400--Sobic009G015500 Sobic009G158600 Sobic009G158600 Sobic004G101400--Sobic009G158600 Sobic003G011400 Sobic003G011400 Sobic004G101400--Sobic003G011400 Sobic009G006500 Sobic009G006500 Sobic004G101400--Sobic009G006500 Sobic004G101400--Sobic003G244100 Sobic005G062500 Sobic005G062500 Sobic001G381700--Sobic005G062500 Sobic004G139100 Sobic004G139100 Sobic001G381700--Sobic004G139100 Sobic007G109800 Sobic007G109800 Sobic001G381700--Sobic007G109800 Sobic003G236551 Sobic003G236551 Sobic001G381700--Sobic003G236551 Sobic001G381700--Sobic001G048900 Sobic008G114800 Sobic008G114800 Sobic001G381700--Sobic008G114800 Sobic001G381700--Sobic001G409400 Sobic001G381700--Sobic003G244100 Sobic001G307000 Sobic001G307000 Sobic001G381700--Sobic001G307000 Sobic002G210300 Sobic002G210300 Sobic006G216300--Sobic002G210300 Sobic002G379400 Sobic002G379400 Sobic006G216300--Sobic002G379400 Sobic003G108200 Sobic003G108200 Sobic006G216300--Sobic003G108200 Sobic002G294700 Sobic002G294700 Sobic006G216300--Sobic002G294700 Sobic002G272900 Sobic002G272900 Sobic006G216300--Sobic002G272900 Sobic001G051800 Sobic001G051800 Sobic006G216300--Sobic001G051800 Sobic003G338900 Sobic003G338900 Sobic006G216300--Sobic003G338900 Sobic001G483400 Sobic001G483400 Sobic006G216300--Sobic001G483400 Sobic004G036600 Sobic004G036600 Sobic006G216300--Sobic004G036600
Octagon: transcription factors


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