Gene annotation
Transcriptome id Sobic.004G047700.1
Synonym Sb04g004080
Functional annotation expressed protein
UniProt C5XVD4
Pfam -
Panther DB PTHR35513
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47830 : -
RAP-DB (Rice) LOC_Os02g06390.1 : expressed protein
MaizeGDB (Corn) Zm00025a019023
Brachypodium KQJ93418
Barley HORVU0Hr1G015450.7 , HORVU0Hr1G015450.5 , HORVU0Hr1G015450.2
Wheat TraesCS6A02G132000 , TraesCS6D02G121800 , TraesCS6B02G160300
Populus -


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cDNA sequences
Sobic.004G047700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
2 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
3 Sobic.003G369500 NPL4, putative, expressed K14015: NPLOC4, nuclear protein localization protein 4 homolog
4 Sobic.010G103900 ribosomal protein L51, putative, expressed K17424: large subunit ribosomal protein L43
5 Sobic.004G272200 secretory carrier-associated membrane protein, putative, expressed -
6 Sobic.001G440700 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
7 Sobic.005G133900 TPR repeat region family protein, expressed -
8 Sobic.009G240900 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
9 Sobic.009G093200 superoxide dismutase, mitochondrial precursor, putative, expressed K04564: superoxide dismutase, Fe-Mn family
10 Sobic.001G436000 expressed protein -
11 Sobic.001G416600 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
12 Sobic.001G357300 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
13 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
14 Sobic.002G306900 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
15 Sobic.001G217000 DUF584 domain containing protein, putative, expressed -
16 Sobic.007G006600 expressed protein -
17 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.001G388600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
19 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -
20 Sobic.010G232100 Constitutively expressed genes(PubMedID : 24456189)@ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B


Gene co-expression network
sample Sobic004G047700 Sobic004G047700 Sobic002G363100 Sobic002G363100 Sobic004G047700--Sobic002G363100 Sobic001G040800 Sobic001G040800 Sobic004G047700--Sobic001G040800 Sobic003G369500 Sobic003G369500 Sobic004G047700--Sobic003G369500 Sobic010G103900 Sobic010G103900 Sobic004G047700--Sobic010G103900 Sobic004G272200 Sobic004G272200 Sobic004G047700--Sobic004G272200 Sobic001G440700 Sobic001G440700 Sobic004G047700--Sobic001G440700 Sobic005G133900 Sobic005G133900 Sobic004G047700--Sobic005G133900 Sobic009G240900 Sobic009G240900 Sobic004G047700--Sobic009G240900 Sobic009G093200 Sobic009G093200 Sobic004G047700--Sobic009G093200 Sobic002G363100--Sobic009G240900 Sobic002G363100--Sobic001G040800 Sobic009G001400 Sobic009G001400 Sobic002G363100--Sobic009G001400 Sobic001G357300 Sobic001G357300 Sobic002G363100--Sobic001G357300 Sobic007G114200 Sobic007G114200 Sobic002G363100--Sobic007G114200 Sobic009G217900 Sobic009G217900 Sobic002G363100--Sobic009G217900 Sobic001G005900 Sobic001G005900 Sobic002G363100--Sobic001G005900 Sobic004G130100 Sobic004G130100 Sobic002G363100--Sobic004G130100 Sobic004G327300 Sobic004G327300 Sobic002G363100--Sobic004G327300 Sobic002G194100 Sobic002G194100 Sobic001G040800--Sobic002G194100 Sobic003G253000 Sobic003G253000 Sobic001G040800--Sobic003G253000 Sobic001G040800--Sobic009G001400 Sobic001G040800--Sobic002G363100 Sobic002G202300 Sobic002G202300 Sobic001G040800--Sobic002G202300 Sobic003G130800 Sobic003G130800 Sobic001G040800--Sobic003G130800 Sobic002G355300 Sobic002G355300 Sobic001G040800--Sobic002G355300 Sobic001G040800--Sobic007G114200 Sobic007G088000 Sobic007G088000 Sobic001G040800--Sobic007G088000 Sobic004G060600 Sobic004G060600 Sobic003G369500--Sobic004G060600 Sobic003G077900 Sobic003G077900 Sobic003G369500--Sobic003G077900 Sobic009G131100 Sobic009G131100 Sobic003G369500--Sobic009G131100 Sobic001G428200 Sobic001G428200 Sobic003G369500--Sobic001G428200 Sobic007G091000 Sobic007G091000 Sobic003G369500--Sobic007G091000 Sobic001G428100 Sobic001G428100 Sobic003G369500--Sobic001G428100 Sobic007G044300 Sobic007G044300 Sobic003G369500--Sobic007G044300 Sobic010G267500 Sobic010G267500 Sobic003G369500--Sobic010G267500 Sobic003G277000 Sobic003G277000 Sobic003G369500--Sobic003G277000 Sobic004G085200 Sobic004G085200 Sobic010G103900--Sobic004G085200 Sobic002G371100 Sobic002G371100 Sobic010G103900--Sobic002G371100 Sobic001G481700 Sobic001G481700 Sobic010G103900--Sobic001G481700 Sobic010G103900--Sobic001G005900 Sobic002G364100 Sobic002G364100 Sobic010G103900--Sobic002G364100 Sobic009G022400 Sobic009G022400 Sobic010G103900--Sobic009G022400 Sobic002G255100 Sobic002G255100 Sobic010G103900--Sobic002G255100 Sobic002G364500 Sobic002G364500 Sobic010G103900--Sobic002G364500 Sobic003G196800 Sobic003G196800 Sobic010G103900--Sobic003G196800 Sobic008G103700 Sobic008G103700 Sobic004G272200--Sobic008G103700 Sobic002G252000 Sobic002G252000 Sobic004G272200--Sobic002G252000 Sobic001G007600 Sobic001G007600 Sobic004G272200--Sobic001G007600 Sobic010G238800 Sobic010G238800 Sobic004G272200--Sobic010G238800 Sobic006G156000 Sobic006G156000 Sobic004G272200--Sobic006G156000 Sobic004G138800 Sobic004G138800 Sobic004G272200--Sobic004G138800 Sobic002G128800 Sobic002G128800 Sobic004G272200--Sobic002G128800 Sobic006G236500 Sobic006G236500 Sobic004G272200--Sobic006G236500 Sobic001G096100 Sobic001G096100 Sobic004G272200--Sobic001G096100 Sobic010G101500 Sobic010G101500 Sobic001G440700--Sobic010G101500 Sobic001G415000 Sobic001G415000 Sobic001G440700--Sobic001G415000 Sobic004G020000 Sobic004G020000 Sobic001G440700--Sobic004G020000 Sobic001G440700--Sobic001G040800 Sobic004G321900 Sobic004G321900 Sobic001G440700--Sobic004G321900 Sobic004G061800 Sobic004G061800 Sobic001G440700--Sobic004G061800 Sobic003G248600 Sobic003G248600 Sobic001G440700--Sobic003G248600 Sobic009G104000 Sobic009G104000 Sobic001G440700--Sobic009G104000 Sobic001G283500 Sobic001G283500 Sobic001G440700--Sobic001G283500 Sobic005G133900--Sobic002G363100 Sobic004G057200 Sobic004G057200 Sobic005G133900--Sobic004G057200 Sobic003G244200 Sobic003G244200 Sobic005G133900--Sobic003G244200 Sobic005G133900--Sobic001G357300 Sobic005G133900--Sobic009G093200 Sobic003G216500 Sobic003G216500 Sobic005G133900--Sobic003G216500 Sobic002G133800 Sobic002G133800 Sobic005G133900--Sobic002G133800 Sobic006G002201 Sobic006G002201 Sobic005G133900--Sobic006G002201 Sobic005G133900--Sobic009G240900 Sobic001G478000 Sobic001G478000 Sobic009G240900--Sobic001G478000 Sobic009G240900--Sobic002G363100 Sobic009G240900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic009G240900--Sobic007G076300 Sobic004G310300 Sobic004G310300 Sobic009G240900--Sobic004G310300 Sobic009G240900--Sobic001G040800 Sobic003G368500 Sobic003G368500 Sobic009G240900--Sobic003G368500 Sobic007G051000 Sobic007G051000 Sobic009G240900--Sobic007G051000 Sobic002G428200 Sobic002G428200 Sobic009G240900--Sobic002G428200 Sobic003G428200 Sobic003G428200 Sobic009G093200--Sobic003G428200 Sobic009G093200--Sobic003G244200 Sobic006G203100 Sobic006G203100 Sobic009G093200--Sobic006G203100 Sobic010G044200 Sobic010G044200 Sobic009G093200--Sobic010G044200 Sobic010G073100 Sobic010G073100 Sobic009G093200--Sobic010G073100 Sobic002G423800 Sobic002G423800 Sobic009G093200--Sobic002G423800 Sobic001G338400 Sobic001G338400 Sobic009G093200--Sobic001G338400 Sobic006G211800 Sobic006G211800 Sobic009G093200--Sobic006G211800 Sobic009G093200--Sobic001G478000
Octagon: transcription factors


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