Gene annotation
Transcriptome id Sobic.007G152800.2,Sobic.007G152800.1,Sobic.007G152800.3
Synonym GAD, GAD1, Sb07g022670
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Glutamate decarboxylase( (PubMedID : 26759170,(PubMedID : 24597475)
decarboxylase, putative, expressed
UniProt A0A1Z5RAZ4 , A0A1Z5RA75 , A0A1Z5RB58
Pfam PF00282
Panther DB PTHR11999 PTHR11999:SF113
NCBI CDD -
KEGG Orthology K01580; E4.1.1.15, gadB, gadA, glutamate decarboxylase
Gene Ontology GO:0016831; carboxy-lyase activity


Orthologs (automatic annotation)
TAIR AT5G17330 : glutamate decarboxylase
RAP-DB (Rice) LOC_Os08g36320.2,LOC_Os08g36320.3 : decarboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a005384 , Zm00025a052950 , Zm00025a007922 , Zm00025a011205 , Zm00025a011196
Brachypodium KQK13491 , KQJ98585 , KQJ82857 , KQJ82853 , KQK22684 , PNT77787
Barley HORVU3Hr1G003050.7 , HORVU3Hr1G003050.6 , HORVU3Hr1G003050.5 , HORVU3Hr1G003050.4 , HORVU3Hr1G003050.3 , HORVU3Hr1G003050.2 , HORVU3Hr1G003050.1 , HORVU2Hr1G078580.8 , HORVU2Hr1G078580.9 , HORVU2Hr1G078580.2 , HORVU2Hr1G078580.1 , HORVU2Hr1G078580.6 , HORVU2Hr1G078580.7 , HORVU2Hr1G078580.4 , HORVU2Hr1G078580.5 , HORVU2Hr1G078560.1 , HORVU2Hr1G078560.2 , HORVU2Hr1G078560.3 , HORVU2Hr1G078560.4 , HORVU2Hr1G078560.5 , HORVU2Hr1G078560.6 , HORVU2Hr1G078580.11 , HORVU2Hr1G078560.7 , HORVU4Hr1G008700.8 , HORVU4Hr1G064790.9 , HORVU4Hr1G064790.14 , HORVU4Hr1G064790.12 , HORVU4Hr1G064790.13 , HORVU4Hr1G064790.10 , HORVU4Hr1G064790.11 , HORVU4Hr1G008700.9 , HORVU4Hr1G064790.5 , HORVU4Hr1G064790.4 , HORVU4Hr1G064790.6 , HORVU4Hr1G064790.1 , HORVU4Hr1G064790.2 , HORVU4Hr1G064790.3 , HORVU4Hr1G008700.1 , HORVU4Hr1G008700.3 , HORVU4Hr1G008700.5 , HORVU7Hr1G081730.1 , HORVU2Hr1G078580.18 , HORVU2Hr1G078580.10 , HORVU4Hr1G064790.8 , HORVU2Hr1G078580.12 , HORVU2Hr1G078580.13 , HORVU2Hr1G078580.14 , HORVU2Hr1G078580.15 , HORVU2Hr1G078580.16 , HORVU2Hr1G078580.3 , HORVU4Hr1G064790.7 , HORVU3Hr1G112860.2 , HORVU3Hr1G112860.1
Wheat TraesCS4A02G075600 , TraesCS3B02G022900 , TraesCS3B02G022900 , TraesCS4B02G231400 , TraesCS3B02G583600 , TraesCS2D02G313500 , TraesCS2B02G334000 , TraesCS2A02G315800 , TraesCS4A02G262600 , TraesCS4A02G262600 , TraesCS2D02G313800 , TraesCS4B02G052300 , TraesCS2B02G333700 , TraesCS2B02G333700 , TraesCS3D02G523200 , TraesCS3D02G023900 , TraesCS3D02G023900 , TraesCS4D02G052500 , TraesCS3A02G022600 , TraesCS3A02G022600 , TraesCS3A02G022600 , TraesCS2A02G315300 , TraesCS3A02G515300 , TraesCS3A02G515300 , TraesCS4D02G232700 , TraesCS4D02G232700 , TraesCS4A02G369200
Populus PNT40057 , PNT09328 , PNT09329 , PNS23468 , PNT09320 , PNT09321 , PNT09322 , PNT09323 , PNT09324 , PNT09325 , PNT09326 , PNT09327


JBrowse

Open New Page


cDNA sequences
Sobic.007G152800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G165200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.005G121200 "similar to HVA22-like protein e, putative, expressed"(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
3 Sobic.001G127800 nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
4 Sobic.001G048900 EF hand family protein, putative, expressed -
5 Sobic.002G359000 formin, putative, expressed -
6 Sobic.008G087500 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
7 Sobic.003G244100 "ABA-Responsive Element (ABRE) -binding factor BZ-1 basic-leucine zipper, maped into a stay green QTL (QSTG12_3"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@transcription factor, putative, expressed K09060: plant G-box-binding factor
8 Sobic.009G072200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Myb transcription factor, putative, expressed -
9 Sobic.002G173800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
10 Sobic.006G163900 homeobox associated leucine zipper, putative, expressed -
11 Sobic.001G342600 PDI, putative, expressed K17609: nucleoredoxin
12 Sobic.004G101400 Up-reguralion under drought(PubMedID : 24916767)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
13 Sobic.004G047700 expressed protein -
14 Sobic.001G460300 expressed protein -
15 Sobic.001G377300 POEI49 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
16 Sobic.004G058200 cytidylyltransferase domain containing protein, expressed K00968: choline-phosphate cytidylyltransferase
17 Sobic.001G409400 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@OsRCI2-5 - Putative low temperature and salt responsive protein, expressed -
18 Sobic.006G116801 - -
19 Sobic.002G164960 - -
20 Sobic.003G336100 auxin efflux carrier component, putative, expressed -


Gene co-expression network
sample Sobic007G152800 Sobic007G152800 Sobic010G165200 Sobic010G165200 Sobic007G152800--Sobic010G165200 Sobic005G121200 Sobic005G121200 Sobic007G152800--Sobic005G121200 Sobic001G127800 Sobic001G127800 Sobic007G152800--Sobic001G127800 Sobic001G048900 Sobic001G048900 Sobic007G152800--Sobic001G048900 Sobic002G359000 Sobic002G359000 Sobic007G152800--Sobic002G359000 Sobic008G087500 Sobic008G087500 Sobic007G152800--Sobic008G087500 Sobic003G244100 Sobic003G244100 Sobic007G152800--Sobic003G244100 Sobic009G072200 Sobic009G072200 Sobic007G152800--Sobic009G072200 Sobic002G173800 Sobic002G173800 Sobic007G152800--Sobic002G173800 Sobic010G165200--Sobic001G127800 Sobic010G165200--Sobic007G152800 Sobic010G165200--Sobic009G072200 Sobic010G165200--Sobic005G121200 Sobic004G333100 Sobic004G333100 Sobic010G165200--Sobic004G333100 Sobic001G132800 Sobic001G132800 Sobic010G165200--Sobic001G132800 Sobic007G054500 Sobic007G054500 Sobic010G165200--Sobic007G054500 Sobic010G165200--Sobic001G048900 Sobic006G064800 Sobic006G064800 Sobic010G165200--Sobic006G064800 Sobic005G121200--Sobic001G127800 Sobic001G460300 Sobic001G460300 Sobic005G121200--Sobic001G460300 Sobic002G337800 Sobic002G337800 Sobic005G121200--Sobic002G337800 Sobic003G278700 Sobic003G278700 Sobic005G121200--Sobic003G278700 Sobic009G030200 Sobic009G030200 Sobic005G121200--Sobic009G030200 Sobic001G396400 Sobic001G396400 Sobic005G121200--Sobic001G396400 Sobic003G198200 Sobic003G198200 Sobic005G121200--Sobic003G198200 Sobic005G121200--Sobic007G152800 Sobic003G198150 Sobic003G198150 Sobic005G121200--Sobic003G198150 Sobic001G127800--Sobic005G121200 Sobic001G127800--Sobic010G165200 Sobic001G127800--Sobic007G152800 Sobic001G127800--Sobic002G337800 Sobic001G127800--Sobic009G072200 Sobic009G073000 Sobic009G073000 Sobic001G127800--Sobic009G073000 Sobic001G342600 Sobic001G342600 Sobic001G127800--Sobic001G342600 Sobic001G127800--Sobic006G064800 Sobic003G209600 Sobic003G209600 Sobic001G127800--Sobic003G209600 Sobic001G048900--Sobic001G127800 Sobic002G020900 Sobic002G020900 Sobic001G048900--Sobic002G020900 Sobic001G048900--Sobic007G152800 Sobic001G048900--Sobic005G121200 Sobic001G409400 Sobic001G409400 Sobic001G048900--Sobic001G409400 Sobic001G048900--Sobic010G165200 Sobic004G101400 Sobic004G101400 Sobic001G048900--Sobic004G101400 Sobic001G381700 Sobic001G381700 Sobic001G048900--Sobic001G381700 Sobic006G216300 Sobic006G216300 Sobic001G048900--Sobic006G216300 Sobic001G045600 Sobic001G045600 Sobic002G359000--Sobic001G045600 Sobic002G359000--Sobic001G342600 Sobic001G110900 Sobic001G110900 Sobic002G359000--Sobic001G110900 Sobic006G220300 Sobic006G220300 Sobic002G359000--Sobic006G220300 Sobic006G025300 Sobic006G025300 Sobic002G359000--Sobic006G025300 Sobic002G359000--Sobic003G198150 Sobic010G092600 Sobic010G092600 Sobic002G359000--Sobic010G092600 Sobic003G035100 Sobic003G035100 Sobic002G359000--Sobic003G035100 Sobic002G359000--Sobic007G152800 Sobic010G146500 Sobic010G146500 Sobic008G087500--Sobic010G146500 Sobic008G087500--Sobic003G244100 Sobic002G164960 Sobic002G164960 Sobic008G087500--Sobic002G164960 Sobic006G116801 Sobic006G116801 Sobic008G087500--Sobic006G116801 Sobic001G424000 Sobic001G424000 Sobic008G087500--Sobic001G424000 Sobic008G087500--Sobic001G409400 Sobic002G075800 Sobic002G075800 Sobic008G087500--Sobic002G075800 Sobic008G087500--Sobic004G101400 Sobic008G087800 Sobic008G087800 Sobic008G087500--Sobic008G087800 Sobic002G141800 Sobic002G141800 Sobic003G244100--Sobic002G141800 Sobic009G116700 Sobic009G116700 Sobic003G244100--Sobic009G116700 Sobic009G046200 Sobic009G046200 Sobic003G244100--Sobic009G046200 Sobic003G244100--Sobic001G409400 Sobic006G104000 Sobic006G104000 Sobic003G244100--Sobic006G104000 Sobic003G011400 Sobic003G011400 Sobic003G244100--Sobic003G011400 Sobic002G097000 Sobic002G097000 Sobic003G244100--Sobic002G097000 Sobic001G373600 Sobic001G373600 Sobic003G244100--Sobic001G373600 Sobic001G466450 Sobic001G466450 Sobic003G244100--Sobic001G466450 Sobic009G072200--Sobic002G164960 Sobic009G072200--Sobic010G165200 Sobic009G072200--Sobic001G127800 Sobic009G257700 Sobic009G257700 Sobic009G072200--Sobic009G257700 Sobic006G000300 Sobic006G000300 Sobic009G072200--Sobic006G000300 Sobic009G072200--Sobic006G064800 Sobic009G072200--Sobic002G075800 Sobic009G072200--Sobic007G152800 Sobic009G072200--Sobic002G173800 Sobic002G173800--Sobic002G075800 Sobic002G110100 Sobic002G110100 Sobic002G173800--Sobic002G110100 Sobic008G029300 Sobic008G029300 Sobic002G173800--Sobic008G029300 Sobic002G173800--Sobic001G460300 Sobic007G180900 Sobic007G180900 Sobic002G173800--Sobic007G180900 Sobic002G173800--Sobic005G121200 Sobic002G193600 Sobic002G193600 Sobic002G173800--Sobic002G193600 Sobic002G118700 Sobic002G118700 Sobic002G173800--Sobic002G118700 Sobic002G173800--Sobic009G072200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.