Gene annotation
Transcriptome id Sobic.001G063400.2,Sobic.001G063400.1
Synonym Sb01g005760, RHF2A
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WY50
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF45
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology K19043; E3 ubiquitin-protein ligase RHF
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G22000 : RING-H2 group F2A
RAP-DB (Rice) LOC_Os03g57500.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016613 , Zm00025a040721 , Zm00025a046027 , Zm00025a037580
Brachypodium KQK20834
Barley HORVU2Hr1G057670.9 , HORVU2Hr1G057670.8 , HORVU2Hr1G057670.2 , HORVU2Hr1G057670.7 , HORVU2Hr1G057670.6 , HORVU2Hr1G057670.5 , HORVU2Hr1G057670.4 , HORVU2Hr1G057670.10
Wheat TraesCS2D02G250100 , TraesCS2B02G268800 , TraesCS2A02G248400
Populus -


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cDNA sequences
Sobic.001G063400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G200000 zinc finger, C3HC4 type, putative, expressed -
2 Sobic.007G076400 expressed protein -
3 Sobic.001G424900 - -
4 Sobic.001G480100 - -
5 Sobic.006G203600 EF hand family protein, putative, expressed -
6 Sobic.009G152100 G-box-binding factor 4, putative, expressed K14432: ABA responsive element binding factor
7 Sobic.003G039900 OsFBDUF1 - F-box and DUF domain containing protein, expressed -
8 Sobic.004G213300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
9 Sobic.005G009100 OsFBX184 - F-box domain containing protein, expressed -
10 Sobic.009G156100 - -
11 Sobic.001G409800 OsFBX234 - F-box domain containing protein, expressed -
12 Sobic.001G287800 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
13 Sobic.003G218801 - -
14 Sobic.008G116700 expressed protein -
15 Sobic.009G049300 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.003G377500 OsFBX10 - F-box domain containing protein, expressed -
17 Sobic.010G071100 expressed protein -
18 Sobic.010G034600 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.003G202600 single myb histone, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.005G025300 dehydrogenase-phosphopantetheinyltransferase, putative, expressed K06133: LYS5, 4'-phosphopantetheinyl transferase


Gene co-expression network
sample Sobic001G063400 Sobic001G063400 Sobic002G200000 Sobic002G200000 Sobic001G063400--Sobic002G200000 Sobic007G076400 Sobic007G076400 Sobic001G063400--Sobic007G076400 Sobic001G424900 Sobic001G424900 Sobic001G063400--Sobic001G424900 Sobic001G480100 Sobic001G480100 Sobic001G063400--Sobic001G480100 Sobic006G203600 Sobic006G203600 Sobic001G063400--Sobic006G203600 Sobic009G152100 Sobic009G152100 Sobic001G063400--Sobic009G152100 Sobic003G039900 Sobic003G039900 Sobic001G063400--Sobic003G039900 Sobic004G213300 Sobic004G213300 Sobic001G063400--Sobic004G213300 Sobic005G009100 Sobic005G009100 Sobic001G063400--Sobic005G009100 Sobic006G060000 Sobic006G060000 Sobic002G200000--Sobic006G060000 Sobic002G200000--Sobic007G076400 Sobic008G116700 Sobic008G116700 Sobic002G200000--Sobic008G116700 Sobic001G141400 Sobic001G141400 Sobic002G200000--Sobic001G141400 Sobic006G115100 Sobic006G115100 Sobic002G200000--Sobic006G115100 Sobic008G055500 Sobic008G055500 Sobic002G200000--Sobic008G055500 Sobic007G172700 Sobic007G172700 Sobic002G200000--Sobic007G172700 Sobic007G087000 Sobic007G087000 Sobic002G200000--Sobic007G087000 Sobic002G355800 Sobic002G355800 Sobic002G200000--Sobic002G355800 Sobic002G084800 Sobic002G084800 Sobic007G076400--Sobic002G084800 Sobic007G076400--Sobic002G200000 Sobic007G076400--Sobic007G087000 Sobic002G079000 Sobic002G079000 Sobic007G076400--Sobic002G079000 Sobic007G076400--Sobic008G116700 Sobic006G250800 Sobic006G250800 Sobic007G076400--Sobic006G250800 Sobic007G076400--Sobic006G060000 Sobic001G188400 Sobic001G188400 Sobic007G076400--Sobic001G188400 Sobic007G076400--Sobic006G115100 Sobic009G059400 Sobic009G059400 Sobic001G424900--Sobic009G059400 Sobic007G218600 Sobic007G218600 Sobic001G424900--Sobic007G218600 Sobic003G058500 Sobic003G058500 Sobic001G424900--Sobic003G058500 Sobic007G223100 Sobic007G223100 Sobic001G424900--Sobic007G223100 Sobic009G166600 Sobic009G166600 Sobic001G424900--Sobic009G166600 Sobic001G424900--Sobic005G009100 Sobic001G424900--Sobic008G116700 Sobic001G130200 Sobic001G130200 Sobic001G424900--Sobic001G130200 Sobic004G345400 Sobic004G345400 Sobic001G424900--Sobic004G345400 Sobic004G209700 Sobic004G209700 Sobic001G480100--Sobic004G209700 Sobic007G125000 Sobic007G125000 Sobic001G480100--Sobic007G125000 Sobic009G092400 Sobic009G092400 Sobic001G480100--Sobic009G092400 Sobic001G384300 Sobic001G384300 Sobic001G480100--Sobic001G384300 Sobic009G228000 Sobic009G228000 Sobic001G480100--Sobic009G228000 Sobic007G008900 Sobic007G008900 Sobic001G480100--Sobic007G008900 Sobic002G112700 Sobic002G112700 Sobic001G480100--Sobic002G112700 Sobic007G218000 Sobic007G218000 Sobic001G480100--Sobic007G218000 Sobic010G226000 Sobic010G226000 Sobic001G480100--Sobic010G226000 Sobic004G116600 Sobic004G116600 Sobic006G203600--Sobic004G116600 Sobic010G181600 Sobic010G181600 Sobic006G203600--Sobic010G181600 Sobic006G203600--Sobic007G218600 Sobic008G111800 Sobic008G111800 Sobic006G203600--Sobic008G111800 Sobic005G049000 Sobic005G049000 Sobic006G203600--Sobic005G049000 Sobic007G077532 Sobic007G077532 Sobic006G203600--Sobic007G077532 Sobic008G006000 Sobic008G006000 Sobic006G203600--Sobic008G006000 Sobic007G192400 Sobic007G192400 Sobic006G203600--Sobic007G192400 Sobic006G203600--Sobic001G424900 Sobic007G018200 Sobic007G018200 Sobic009G152100--Sobic007G018200 Sobic009G171200 Sobic009G171200 Sobic009G152100--Sobic009G171200 Sobic001G524000 Sobic001G524000 Sobic009G152100--Sobic001G524000 Sobic003G381600 Sobic003G381600 Sobic009G152100--Sobic003G381600 Sobic009G152100--Sobic001G424900 Sobic009G152100--Sobic009G166600 Sobic005G197100 Sobic005G197100 Sobic009G152100--Sobic005G197100 Sobic004G180900 Sobic004G180900 Sobic009G152100--Sobic004G180900 Sobic009G152100--Sobic001G063400 Sobic003G039900--Sobic001G141400 Sobic007G147400 Sobic007G147400 Sobic003G039900--Sobic007G147400 Sobic006G234700 Sobic006G234700 Sobic003G039900--Sobic006G234700 Sobic003G444800 Sobic003G444800 Sobic003G039900--Sobic003G444800 Sobic004G111700 Sobic004G111700 Sobic003G039900--Sobic004G111700 Sobic002G103600 Sobic002G103600 Sobic003G039900--Sobic002G103600 Sobic003G039900--Sobic009G228000 Sobic001G376100 Sobic001G376100 Sobic003G039900--Sobic001G376100 Sobic001G376200 Sobic001G376200 Sobic003G039900--Sobic001G376200 Sobic003G198900 Sobic003G198900 Sobic004G213300--Sobic003G198900 Sobic004G302800 Sobic004G302800 Sobic004G213300--Sobic004G302800 Sobic001G475300 Sobic001G475300 Sobic004G213300--Sobic001G475300 Sobic003G250400 Sobic003G250400 Sobic004G213300--Sobic003G250400 Sobic003G134300 Sobic003G134300 Sobic004G213300--Sobic003G134300 Sobic004G198600 Sobic004G198600 Sobic004G213300--Sobic004G198600 Sobic003G243800 Sobic003G243800 Sobic004G213300--Sobic003G243800 Sobic004G213300--Sobic007G172700 Sobic004G213300--Sobic008G055500 Sobic005G009100--Sobic001G141400 Sobic004G122900 Sobic004G122900 Sobic005G009100--Sobic004G122900 Sobic002G147200 Sobic002G147200 Sobic005G009100--Sobic002G147200 Sobic009G199500 Sobic009G199500 Sobic005G009100--Sobic009G199500 Sobic004G042900 Sobic004G042900 Sobic005G009100--Sobic004G042900 Sobic005G009100--Sobic007G192400 Sobic005G009100--Sobic010G181600 Sobic005G123400 Sobic005G123400 Sobic005G009100--Sobic005G123400 Sobic007G030100 Sobic007G030100 Sobic005G009100--Sobic007G030100
Octagon: transcription factors


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