Gene annotation
Transcriptome id Sobic.010G034600.1
Synonym Sb10g003130
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A194YH31
Pfam PF12678
Panther DB PTHR15710
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G37150 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g26420.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G056800 DEFL1 - Defensin and Defensin-like DEFL family, expressed -
2 Sobic.003G421000 - -
3 Sobic.008G018700 expressed protein -
4 Sobic.001G323701 - -
5 Sobic.007G226500 spotted leaf 11, putative, expressed -
6 Sobic.002G098900 phospholipase D, putative, expressed K01115: phospholipase D1/2
7 Sobic.010G109800 - -
8 Sobic.006G079800 OsFBX199 - F-box domain containing protein, expressed -
9 Sobic.001G067700 amine oxidase-related, putative, expressed -
10 Sobic.004G165400 - -
11 Sobic.009G113400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phytochrome A-associated F-box protein, putative, expressed -
12 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
13 Sobic.002G310900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTPase activating protein, putative, expressed -
14 Sobic.001G078400 OsSigP2 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K03100: signal peptidase I
15 Sobic.004G130932 - -
16 Sobic.001G536800 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
17 Sobic.003G163301 - -
18 Sobic.008G068200 amino acid transporter, putative, expressed -
19 Sobic.008G069300 - -
20 Sobic.003G198900 protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic010G034600 Sobic010G034600 Sobic004G056800 Sobic004G056800 Sobic010G034600--Sobic004G056800 Sobic003G421000 Sobic003G421000 Sobic010G034600--Sobic003G421000 Sobic008G018700 Sobic008G018700 Sobic010G034600--Sobic008G018700 Sobic001G323701 Sobic001G323701 Sobic010G034600--Sobic001G323701 Sobic007G226500 Sobic007G226500 Sobic010G034600--Sobic007G226500 Sobic002G098900 Sobic002G098900 Sobic010G034600--Sobic002G098900 Sobic010G109800 Sobic010G109800 Sobic010G034600--Sobic010G109800 Sobic006G079800 Sobic006G079800 Sobic010G034600--Sobic006G079800 Sobic001G067700 Sobic001G067700 Sobic010G034600--Sobic001G067700 Sobic004G056800--Sobic008G018700 Sobic002G095600 Sobic002G095600 Sobic004G056800--Sobic002G095600 Sobic004G056800--Sobic010G109800 Sobic004G056800--Sobic006G079800 Sobic004G056800--Sobic010G034600 Sobic004G056800--Sobic007G226500 Sobic005G076800 Sobic005G076800 Sobic004G056800--Sobic005G076800 Sobic002G304600 Sobic002G304600 Sobic004G056800--Sobic002G304600 Sobic004G056800--Sobic003G421000 Sobic003G421000--Sobic008G018700 Sobic003G291800 Sobic003G291800 Sobic003G421000--Sobic003G291800 Sobic003G421000--Sobic010G109800 Sobic003G421000--Sobic006G079800 Sobic008G069300 Sobic008G069300 Sobic003G421000--Sobic008G069300 Sobic003G044300 Sobic003G044300 Sobic003G421000--Sobic003G044300 Sobic003G421000--Sobic010G034600 Sobic001G257200 Sobic001G257200 Sobic003G421000--Sobic001G257200 Sobic003G163301 Sobic003G163301 Sobic003G421000--Sobic003G163301 Sobic008G018700--Sobic004G056800 Sobic008G018700--Sobic010G109800 Sobic008G018700--Sobic003G421000 Sobic008G018700--Sobic002G095600 Sobic008G018700--Sobic007G226500 Sobic008G018700--Sobic006G079800 Sobic008G018700--Sobic001G067700 Sobic008G018700--Sobic001G257200 Sobic001G307500 Sobic001G307500 Sobic008G018700--Sobic001G307500 Sobic001G323701--Sobic010G034600 Sobic001G323701--Sobic004G056800 Sobic001G323701--Sobic006G079800 Sobic001G323701--Sobic010G109800 Sobic001G323701--Sobic003G421000 Sobic005G099700 Sobic005G099700 Sobic001G323701--Sobic005G099700 Sobic009G191300 Sobic009G191300 Sobic001G323701--Sobic009G191300 Sobic005G015200 Sobic005G015200 Sobic001G323701--Sobic005G015200 Sobic010G260700 Sobic010G260700 Sobic001G323701--Sobic010G260700 Sobic007G226500--Sobic010G109800 Sobic003G431800 Sobic003G431800 Sobic007G226500--Sobic003G431800 Sobic009G044700 Sobic009G044700 Sobic007G226500--Sobic009G044700 Sobic007G226500--Sobic006G079800 Sobic007G226500--Sobic005G076800 Sobic003G024400 Sobic003G024400 Sobic007G226500--Sobic003G024400 Sobic010G149800 Sobic010G149800 Sobic007G226500--Sobic010G149800 Sobic007G226500--Sobic008G018700 Sobic002G011900 Sobic002G011900 Sobic007G226500--Sobic002G011900 Sobic003G403300 Sobic003G403300 Sobic002G098900--Sobic003G403300 Sobic002G407000 Sobic002G407000 Sobic002G098900--Sobic002G407000 Sobic002G098900--Sobic001G067700 Sobic001G198400 Sobic001G198400 Sobic002G098900--Sobic001G198400 Sobic002G376600 Sobic002G376600 Sobic002G098900--Sobic002G376600 Sobic003G092800 Sobic003G092800 Sobic002G098900--Sobic003G092800 Sobic002G098900--Sobic008G069300 Sobic003G198900 Sobic003G198900 Sobic002G098900--Sobic003G198900 Sobic003G134300 Sobic003G134300 Sobic002G098900--Sobic003G134300 Sobic010G109800--Sobic001G307500 Sobic010G109800--Sobic001G257200 Sobic010G109800--Sobic006G079800 Sobic010G109800--Sobic005G076800 Sobic010G109800--Sobic003G024400 Sobic001G106800 Sobic001G106800 Sobic010G109800--Sobic001G106800 Sobic006G204400 Sobic006G204400 Sobic010G109800--Sobic006G204400 Sobic010G109800--Sobic002G095600 Sobic002G192800 Sobic002G192800 Sobic010G109800--Sobic002G192800 Sobic006G079800--Sobic010G109800 Sobic006G079800--Sobic001G257200 Sobic006G079800--Sobic001G307500 Sobic006G079800--Sobic005G076800 Sobic001G398200 Sobic001G398200 Sobic006G079800--Sobic001G398200 Sobic006G079800--Sobic001G106800 Sobic006G079800--Sobic003G024400 Sobic006G079800--Sobic009G044700 Sobic002G180800 Sobic002G180800 Sobic006G079800--Sobic002G180800 Sobic001G067700--Sobic003G403300 Sobic001G067700--Sobic002G407000 Sobic001G067700--Sobic002G098900 Sobic001G178100 Sobic001G178100 Sobic001G067700--Sobic001G178100 Sobic001G067700--Sobic008G018700 Sobic003G010800 Sobic003G010800 Sobic001G067700--Sobic003G010800 Sobic002G181600 Sobic002G181600 Sobic001G067700--Sobic002G181600 Sobic002G310900 Sobic002G310900 Sobic001G067700--Sobic002G310900 Sobic005G111700 Sobic005G111700 Sobic001G067700--Sobic005G111700
Octagon: transcription factors


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