Gene annotation
Transcriptome id Sobic.001G323701.1,Sobic.001G323701.3,Sobic.001G323701.4,Sobic.001G323701.2
Synonym -
Functional annotation -
UniProt A0A1Z5S8P0 , A0A1Z5S8P6 , A0A1Z5S8N3 , A0A1Z5S8N7
Pfam PF00076 PF12872
Panther DB PTHR24009 PTHR24009:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G05160 : CCCH-type zinc fingerfamily protein with RNA-binding domain
RAP-DB (Rice) LOC_Os08g03310.3,LOC_Os08g03310.4 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a053638
Brachypodium KQK14423
Barley HORVU5Hr1G054870.2 , HORVU5Hr1G054870.1
Wheat TraesCS5B02G177900 , TraesCS5A02G180000 , TraesCS5D02G184600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G034600 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.004G056800 DEFL1 - Defensin and Defensin-like DEFL family, expressed -
3 Sobic.006G079800 OsFBX199 - F-box domain containing protein, expressed -
4 Sobic.010G109800 - -
5 Sobic.003G421000 - -
6 Sobic.005G099700 expressed protein -
7 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
8 Sobic.005G015200 Phototropic-responsive NPH3 family protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
9 Sobic.010G260700 kelch motif family protein, expressed -
10 Sobic.010G244100 GDSL-like Lipase/Acylhydrolase superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.001G135400 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@GATA transcription factor 25, putative, expressed -
12 Sobic.008G018700 expressed protein -
13 Sobic.002G228400 gibberellin receptor GID1L2, putative, expressed -
14 Sobic.001G004500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
15 Sobic.002G119500 Photosystem I reaction center subunit IV(PubMedID : 26186930)@photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed K02693: photosystem I subunit IV
16 Sobic.007G226500 spotted leaf 11, putative, expressed -
17 Sobic.004G210601 - -
18 Sobic.004G165400 - -
19 Sobic.007G204400 expressed protein -
20 Sobic.004G125200 - -


Gene co-expression network
sample Sobic001G323701 Sobic001G323701 Sobic010G034600 Sobic010G034600 Sobic001G323701--Sobic010G034600 Sobic004G056800 Sobic004G056800 Sobic001G323701--Sobic004G056800 Sobic006G079800 Sobic006G079800 Sobic001G323701--Sobic006G079800 Sobic010G109800 Sobic010G109800 Sobic001G323701--Sobic010G109800 Sobic003G421000 Sobic003G421000 Sobic001G323701--Sobic003G421000 Sobic005G099700 Sobic005G099700 Sobic001G323701--Sobic005G099700 Sobic009G191300 Sobic009G191300 Sobic001G323701--Sobic009G191300 Sobic005G015200 Sobic005G015200 Sobic001G323701--Sobic005G015200 Sobic010G260700 Sobic010G260700 Sobic001G323701--Sobic010G260700 Sobic010G034600--Sobic004G056800 Sobic010G034600--Sobic003G421000 Sobic008G018700 Sobic008G018700 Sobic010G034600--Sobic008G018700 Sobic010G034600--Sobic001G323701 Sobic007G226500 Sobic007G226500 Sobic010G034600--Sobic007G226500 Sobic002G098900 Sobic002G098900 Sobic010G034600--Sobic002G098900 Sobic010G034600--Sobic010G109800 Sobic010G034600--Sobic006G079800 Sobic001G067700 Sobic001G067700 Sobic010G034600--Sobic001G067700 Sobic004G056800--Sobic008G018700 Sobic002G095600 Sobic002G095600 Sobic004G056800--Sobic002G095600 Sobic004G056800--Sobic010G109800 Sobic004G056800--Sobic006G079800 Sobic004G056800--Sobic010G034600 Sobic004G056800--Sobic007G226500 Sobic005G076800 Sobic005G076800 Sobic004G056800--Sobic005G076800 Sobic002G304600 Sobic002G304600 Sobic004G056800--Sobic002G304600 Sobic004G056800--Sobic003G421000 Sobic006G079800--Sobic010G109800 Sobic001G257200 Sobic001G257200 Sobic006G079800--Sobic001G257200 Sobic001G307500 Sobic001G307500 Sobic006G079800--Sobic001G307500 Sobic006G079800--Sobic005G076800 Sobic001G398200 Sobic001G398200 Sobic006G079800--Sobic001G398200 Sobic001G106800 Sobic001G106800 Sobic006G079800--Sobic001G106800 Sobic003G024400 Sobic003G024400 Sobic006G079800--Sobic003G024400 Sobic009G044700 Sobic009G044700 Sobic006G079800--Sobic009G044700 Sobic002G180800 Sobic002G180800 Sobic006G079800--Sobic002G180800 Sobic010G109800--Sobic001G307500 Sobic010G109800--Sobic001G257200 Sobic010G109800--Sobic006G079800 Sobic010G109800--Sobic005G076800 Sobic010G109800--Sobic003G024400 Sobic010G109800--Sobic001G106800 Sobic006G204400 Sobic006G204400 Sobic010G109800--Sobic006G204400 Sobic010G109800--Sobic002G095600 Sobic002G192800 Sobic002G192800 Sobic010G109800--Sobic002G192800 Sobic003G421000--Sobic008G018700 Sobic003G291800 Sobic003G291800 Sobic003G421000--Sobic003G291800 Sobic003G421000--Sobic010G109800 Sobic003G421000--Sobic006G079800 Sobic008G069300 Sobic008G069300 Sobic003G421000--Sobic008G069300 Sobic003G044300 Sobic003G044300 Sobic003G421000--Sobic003G044300 Sobic003G421000--Sobic010G034600 Sobic003G421000--Sobic001G257200 Sobic003G163301 Sobic003G163301 Sobic003G421000--Sobic003G163301 Sobic001G435500 Sobic001G435500 Sobic005G099700--Sobic001G435500 Sobic001G070500 Sobic001G070500 Sobic005G099700--Sobic001G070500 Sobic010G189300 Sobic010G189300 Sobic005G099700--Sobic010G189300 Sobic003G163700 Sobic003G163700 Sobic005G099700--Sobic003G163700 Sobic004G272600 Sobic004G272600 Sobic005G099700--Sobic004G272600 Sobic002G033900 Sobic002G033900 Sobic005G099700--Sobic002G033900 Sobic001G066600 Sobic001G066600 Sobic005G099700--Sobic001G066600 Sobic006G073500 Sobic006G073500 Sobic005G099700--Sobic006G073500 Sobic009G229700 Sobic009G229700 Sobic005G099700--Sobic009G229700 Sobic008G038300 Sobic008G038300 Sobic009G191300--Sobic008G038300 Sobic003G209800 Sobic003G209800 Sobic009G191300--Sobic003G209800 Sobic002G040100 Sobic002G040100 Sobic009G191300--Sobic002G040100 Sobic003G052500 Sobic003G052500 Sobic009G191300--Sobic003G052500 Sobic004G035500 Sobic004G035500 Sobic009G191300--Sobic004G035500 Sobic003G359100 Sobic003G359100 Sobic009G191300--Sobic003G359100 Sobic003G199800 Sobic003G199800 Sobic009G191300--Sobic003G199800 Sobic010G109500 Sobic010G109500 Sobic009G191300--Sobic010G109500 Sobic001G338700 Sobic001G338700 Sobic009G191300--Sobic001G338700 Sobic003G097800 Sobic003G097800 Sobic005G015200--Sobic003G097800 Sobic005G015200--Sobic004G272600 Sobic005G015200--Sobic001G338700 Sobic005G015200--Sobic009G191300 Sobic002G233300 Sobic002G233300 Sobic005G015200--Sobic002G233300 Sobic005G167500 Sobic005G167500 Sobic005G015200--Sobic005G167500 Sobic005G015200--Sobic001G070500 Sobic005G015200--Sobic003G052500 Sobic006G135100 Sobic006G135100 Sobic005G015200--Sobic006G135100 Sobic010G260700--Sobic009G191300 Sobic010G260700--Sobic005G099700 Sobic010G260700--Sobic001G070500 Sobic010G260700--Sobic003G052500 Sobic010G260700--Sobic002G033900 Sobic001G078000 Sobic001G078000 Sobic010G260700--Sobic001G078000 Sobic002G119500 Sobic002G119500 Sobic010G260700--Sobic002G119500 Sobic004G056900 Sobic004G056900 Sobic010G260700--Sobic004G056900 Sobic010G260700--Sobic004G272600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.