Gene annotation
Transcriptome id Sobic.001G083450.1
Synonym -
Functional annotation -
UniProt A0A1Z5S4W6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G148100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
3 Sobic.004G004400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00016: LDH, L-lactate dehydrogenase
4 Sobic.007G147700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
5 Sobic.001G105900 "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
6 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G142300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.001G201200 - -
11 Sobic.002G291900 RING-H2 finger protein, putative, expressed -
12 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
13 Sobic.006G253801 - K14488: SAUR family protein
14 Sobic.001G259400 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
15 Sobic.004G088300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBK4 - F-box domain and kelch repeat containing protein, expressed -
16 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
17 Sobic.003G284200 expressed protein -
18 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
19 Sobic.008G118700 respiratory burst oxidase, putative, expressed -
20 Sobic.001G280800 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic001G083450 Sobic001G083450 Sobic009G148100 Sobic009G148100 Sobic001G083450--Sobic009G148100 Sobic001G443800 Sobic001G443800 Sobic001G083450--Sobic001G443800 Sobic004G004400 Sobic004G004400 Sobic001G083450--Sobic004G004400 Sobic007G147700 Sobic007G147700 Sobic001G083450--Sobic007G147700 Sobic001G105900 Sobic001G105900 Sobic001G083450--Sobic001G105900 Sobic010G198600 Sobic010G198600 Sobic001G083450--Sobic010G198600 Sobic010G198500 Sobic010G198500 Sobic001G083450--Sobic010G198500 Sobic001G076100 Sobic001G076100 Sobic001G083450--Sobic001G076100 Sobic003G142300 Sobic003G142300 Sobic001G083450--Sobic003G142300 Sobic006G190100 Sobic006G190100 Sobic009G148100--Sobic006G190100 Sobic009G148100--Sobic010G198600 Sobic009G148100--Sobic001G105900 Sobic006G190500 Sobic006G190500 Sobic009G148100--Sobic006G190500 Sobic009G148100--Sobic001G076100 Sobic009G148100--Sobic001G443800 Sobic002G389000 Sobic002G389000 Sobic009G148100--Sobic002G389000 Sobic004G088300 Sobic004G088300 Sobic009G148100--Sobic004G088300 Sobic002G291900 Sobic002G291900 Sobic009G148100--Sobic002G291900 Sobic003G197200 Sobic003G197200 Sobic001G443800--Sobic003G197200 Sobic001G201200 Sobic001G201200 Sobic001G443800--Sobic001G201200 Sobic001G443800--Sobic001G076100 Sobic003G148600 Sobic003G148600 Sobic001G443800--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic001G443800--Sobic001G371800 Sobic001G443800--Sobic010G198500 Sobic003G123600 Sobic003G123600 Sobic001G443800--Sobic003G123600 Sobic007G214600 Sobic007G214600 Sobic001G443800--Sobic007G214600 Sobic001G443800--Sobic006G190100 Sobic001G280800 Sobic001G280800 Sobic004G004400--Sobic001G280800 Sobic004G004400--Sobic010G198600 Sobic004G004400--Sobic006G190100 Sobic004G004400--Sobic003G142300 Sobic004G004400--Sobic009G148100 Sobic001G279300 Sobic001G279300 Sobic004G004400--Sobic001G279300 Sobic002G261200 Sobic002G261200 Sobic004G004400--Sobic002G261200 Sobic006G054800 Sobic006G054800 Sobic004G004400--Sobic006G054800 Sobic003G362700 Sobic003G362700 Sobic004G004400--Sobic003G362700 Sobic007G147700--Sobic010G198500 Sobic007G147700--Sobic003G197200 Sobic007G147700--Sobic001G201200 Sobic007G147700--Sobic001G443800 Sobic007G147700--Sobic007G214600 Sobic007G147700--Sobic001G105900 Sobic001G481300 Sobic001G481300 Sobic007G147700--Sobic001G481300 Sobic003G355100 Sobic003G355100 Sobic007G147700--Sobic003G355100 Sobic001G279350 Sobic001G279350 Sobic007G147700--Sobic001G279350 Sobic001G105900--Sobic007G147700 Sobic001G105900--Sobic001G443800 Sobic001G105900--Sobic003G197200 Sobic001G105900--Sobic002G291900 Sobic001G190100 Sobic001G190100 Sobic001G105900--Sobic001G190100 Sobic001G105900--Sobic001G201200 Sobic001G105900--Sobic010G198500 Sobic001G105900--Sobic003G148600 Sobic001G105900--Sobic009G148100 Sobic010G198600--Sobic001G280800 Sobic001G138600 Sobic001G138600 Sobic010G198600--Sobic001G138600 Sobic003G382800 Sobic003G382800 Sobic010G198600--Sobic003G382800 Sobic001G169500 Sobic001G169500 Sobic010G198600--Sobic001G169500 Sobic004G336500 Sobic004G336500 Sobic010G198600--Sobic004G336500 Sobic010G198600--Sobic006G190100 Sobic010G198600--Sobic002G261200 Sobic003G432700 Sobic003G432700 Sobic010G198600--Sobic003G432700 Sobic009G184000 Sobic009G184000 Sobic010G198600--Sobic009G184000 Sobic010G198500--Sobic007G214600 Sobic010G198500--Sobic001G201200 Sobic010G198500--Sobic003G197200 Sobic010G198500--Sobic007G147700 Sobic010G198500--Sobic001G443800 Sobic004G109600 Sobic004G109600 Sobic010G198500--Sobic004G109600 Sobic010G198500--Sobic001G371800 Sobic010G198500--Sobic003G355100 Sobic010G198500--Sobic001G481300 Sobic001G076100--Sobic001G201200 Sobic001G076100--Sobic001G443800 Sobic001G076100--Sobic003G123600 Sobic001G076100--Sobic001G371800 Sobic001G107800 Sobic001G107800 Sobic001G076100--Sobic001G107800 Sobic001G076100--Sobic002G389000 Sobic001G076100--Sobic003G148600 Sobic001G076100--Sobic003G197200 Sobic006G230600 Sobic006G230600 Sobic001G076100--Sobic006G230600 Sobic002G189100 Sobic002G189100 Sobic003G142300--Sobic002G189100 Sobic009G192600 Sobic009G192600 Sobic003G142300--Sobic009G192600 Sobic003G142300--Sobic003G362700 Sobic001G259400 Sobic001G259400 Sobic003G142300--Sobic001G259400 Sobic006G101100 Sobic006G101100 Sobic003G142300--Sobic006G101100 Sobic004G064500 Sobic004G064500 Sobic003G142300--Sobic004G064500 Sobic003G313800 Sobic003G313800 Sobic003G142300--Sobic003G313800 Sobic001G259600 Sobic001G259600 Sobic003G142300--Sobic001G259600 Sobic008G066401 Sobic008G066401 Sobic003G142300--Sobic008G066401
Octagon: transcription factors


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