Gene annotation
Transcriptome id Sobic.001G093800.1
Synonym SPI, Sb01g008410
Functional annotation WD domain containing protein, putative, expressed
UniProt A0A1B6QI29
Pfam PF14844 PF00400 PF02138
Panther DB PTHR13743 PTHR13743:SF84
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G03060 : Beige/BEACH domain ;WD domain, G-beta repeat protein
RAP-DB (Rice) LOC_Os03g53280.1 : WD domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008106
Brachypodium KQK13255
Barley HORVU5Hr1G094420.1 , HORVU5Hr1G094420.2 , HORVU5Hr1G094420.3 , HORVU5Hr1G094420.4 , HORVU5Hr1G094420.5 , HORVU5Hr1G094420.6 , HORVU5Hr1G094420.7 , HORVU5Hr1G094420.8 , HORVU5Hr1G094420.9 , HORVU5Hr1G094420.18 , HORVU5Hr1G094420.19 , HORVU5Hr1G094420.12 , HORVU5Hr1G094420.13 , HORVU5Hr1G094420.11 , HORVU5Hr1G094420.16 , HORVU5Hr1G094420.17 , HORVU5Hr1G094420.14 , HORVU5Hr1G094420.15 , HORVU5Hr1G094420.22 , HORVU5Hr1G094420.21 , HORVU5Hr1G094420.20 , HORVU5Hr1G094420.10
Wheat TraesCS5D02G392900 , TraesCS5A02G383300 , TraesCS5B02G387800 , TraesCS5B02G387800 , TraesCS5B02G387800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G118900 expressed protein -
2 Sobic.010G139500 phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
3 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
4 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
5 Sobic.004G204100 expressed protein -
6 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
7 Sobic.003G233400 expressed protein -
8 Sobic.003G334700 HEAT, putative, expressed K16803: CKAP5, cytoskeleton-associated protein 5
9 Sobic.001G437400 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
10 Sobic.003G314700 expressed protein -
11 Sobic.004G040500 expressed protein -
12 Sobic.008G124800 expressed protein -
13 Sobic.001G301200 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
14 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
15 Sobic.002G408800 protein kinase family protein, putative, expressed K08819: cyclin-dependent kinase 12/13
16 Sobic.002G308500 peptide-Nasparagine amidase, putative, expressed K01456: E3.5.1.52, NGLY1, peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase
17 Sobic.006G265200 zinc finger, RING-type, putative, expressed K17592: sacsin
18 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
19 Sobic.006G173200 beige/BEACH domain containing protein, expressed -
20 Sobic.004G290000 OsSub19 - Putative Subtilisin homologue, expressed K01280: tripeptidyl-peptidase II


Gene co-expression network
sample Sobic001G093800 Sobic001G093800 Sobic009G118900 Sobic009G118900 Sobic001G093800--Sobic009G118900 Sobic010G139500 Sobic010G139500 Sobic001G093800--Sobic010G139500 Sobic003G029600 Sobic003G029600 Sobic001G093800--Sobic003G029600 Sobic002G340900 Sobic002G340900 Sobic001G093800--Sobic002G340900 Sobic004G204100 Sobic004G204100 Sobic001G093800--Sobic004G204100 Sobic001G287500 Sobic001G287500 Sobic001G093800--Sobic001G287500 Sobic003G233400 Sobic003G233400 Sobic001G093800--Sobic003G233400 Sobic003G334700 Sobic003G334700 Sobic001G093800--Sobic003G334700 Sobic001G437400 Sobic001G437400 Sobic001G093800--Sobic001G437400 Sobic001G117800 Sobic001G117800 Sobic009G118900--Sobic001G117800 Sobic009G118900--Sobic002G340900 Sobic009G118900--Sobic001G437400 Sobic010G178600 Sobic010G178600 Sobic009G118900--Sobic010G178600 Sobic009G118900--Sobic003G029600 Sobic002G070600 Sobic002G070600 Sobic009G118900--Sobic002G070600 Sobic004G174700 Sobic004G174700 Sobic009G118900--Sobic004G174700 Sobic004G336300 Sobic004G336300 Sobic009G118900--Sobic004G336300 Sobic009G118900--Sobic003G334700 Sobic010G139500--Sobic004G204100 Sobic010G139500--Sobic003G334700 Sobic002G119600 Sobic002G119600 Sobic010G139500--Sobic002G119600 Sobic003G314700 Sobic003G314700 Sobic010G139500--Sobic003G314700 Sobic003G405500 Sobic003G405500 Sobic010G139500--Sobic003G405500 Sobic008G124800 Sobic008G124800 Sobic010G139500--Sobic008G124800 Sobic002G412700 Sobic002G412700 Sobic010G139500--Sobic002G412700 Sobic007G145400 Sobic007G145400 Sobic010G139500--Sobic007G145400 Sobic010G070600 Sobic010G070600 Sobic010G139500--Sobic010G070600 Sobic003G029600--Sobic001G117800 Sobic003G029600--Sobic003G314700 Sobic003G029600--Sobic002G070600 Sobic003G029600--Sobic002G340900 Sobic001G301200 Sobic001G301200 Sobic003G029600--Sobic001G301200 Sobic001G449900 Sobic001G449900 Sobic003G029600--Sobic001G449900 Sobic003G029600--Sobic008G124800 Sobic003G029600--Sobic009G118900 Sobic003G029600--Sobic001G437400 Sobic002G340900--Sobic008G124800 Sobic002G340900--Sobic001G437400 Sobic006G021700 Sobic006G021700 Sobic002G340900--Sobic006G021700 Sobic004G053500 Sobic004G053500 Sobic002G340900--Sobic004G053500 Sobic002G340900--Sobic001G117800 Sobic002G340900--Sobic009G118900 Sobic002G340900--Sobic003G029600 Sobic004G223300 Sobic004G223300 Sobic002G340900--Sobic004G223300 Sobic001G474400 Sobic001G474400 Sobic002G340900--Sobic001G474400 Sobic010G223100 Sobic010G223100 Sobic004G204100--Sobic010G223100 Sobic004G204100--Sobic010G139500 Sobic004G204100--Sobic001G287500 Sobic004G204100--Sobic003G233400 Sobic004G023100 Sobic004G023100 Sobic004G204100--Sobic004G023100 Sobic004G204100--Sobic003G314700 Sobic002G179400 Sobic002G179400 Sobic004G204100--Sobic002G179400 Sobic004G040500 Sobic004G040500 Sobic004G204100--Sobic004G040500 Sobic003G163200 Sobic003G163200 Sobic004G204100--Sobic003G163200 Sobic001G287500--Sobic003G233400 Sobic003G072200 Sobic003G072200 Sobic001G287500--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic001G287500--Sobic007G098500 Sobic004G051200 Sobic004G051200 Sobic001G287500--Sobic004G051200 Sobic008G092600 Sobic008G092600 Sobic001G287500--Sobic008G092600 Sobic001G347500 Sobic001G347500 Sobic001G287500--Sobic001G347500 Sobic001G426600 Sobic001G426600 Sobic001G287500--Sobic001G426600 Sobic001G287500--Sobic004G040500 Sobic001G287500--Sobic004G204100 Sobic003G233400--Sobic001G287500 Sobic003G233400--Sobic003G072200 Sobic003G233400--Sobic007G098500 Sobic001G137000 Sobic001G137000 Sobic003G233400--Sobic001G137000 Sobic003G312100 Sobic003G312100 Sobic003G233400--Sobic003G312100 Sobic003G233400--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic003G233400--Sobic002G396500 Sobic003G233400--Sobic002G179400 Sobic003G233400--Sobic004G051200 Sobic003G334700--Sobic010G139500 Sobic003G334700--Sobic001G437400 Sobic003G334700--Sobic003G314700 Sobic001G118000 Sobic001G118000 Sobic003G334700--Sobic001G118000 Sobic005G059500 Sobic005G059500 Sobic003G334700--Sobic005G059500 Sobic003G334700--Sobic002G119600 Sobic003G293000 Sobic003G293000 Sobic003G334700--Sobic003G293000 Sobic003G334700--Sobic004G336300 Sobic010G000800 Sobic010G000800 Sobic003G334700--Sobic010G000800 Sobic001G437400--Sobic002G340900 Sobic001G437400--Sobic003G314700 Sobic003G250900 Sobic003G250900 Sobic001G437400--Sobic003G250900 Sobic001G437400--Sobic009G118900 Sobic001G437400--Sobic003G029600 Sobic001G437400--Sobic001G117800 Sobic001G437400--Sobic003G334700 Sobic001G437400--Sobic008G124800 Sobic007G019300 Sobic007G019300 Sobic001G437400--Sobic007G019300
Octagon: transcription factors


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