Gene annotation
Transcriptome id Sobic.001G117600.1,Sobic.001G117600.2
Synonym Sb01g010380
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1Z5S5A6 , C5WN39
Pfam PF12854 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF297
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G22760 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g06490.2,LOC_Os08g06490.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a007842
Brachypodium KQJ95283
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G117600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G223500 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.004G079500 - -
3 Sobic.010G240001 - -
4 Sobic.007G030800 expressed protein -
5 Sobic.004G154700 choline/ethanolamine kinase, putative, expressed -
6 Sobic.003G321600 PPR repeat domain containing protein, putative, expressed -
7 Sobic.001G052800 FHA domain containing protein, putative, expressed -
8 Sobic.004G266900 AAA-type ATPase family protein, putative, expressed K17681: ATPase family AAA domain-containing protein 3A/B
9 Sobic.003G112900 expressed protein -
10 Sobic.005G038500 pentatricopeptide containing protein, putative, expressed -
11 Sobic.002G155000 EMB1381, putative, expressed -
12 Sobic.010G134600 pentatricopeptide, putative, expressed -
13 Sobic.001G052600 riboflavin biosynthesis protein-related, putative, expressed -
14 Sobic.009G008200 STE_PAK_Ste20++TranslationKinase_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
15 Sobic.002G179800 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
16 Sobic.002G296400 E3 ubiquitin-protein ligase HERC2, putative, expressed -
17 Sobic.003G298200 dehydrogenase, putative, expressed -
18 Sobic.004G124300 tesmin/TSO1-like CXC domain containing protein, expressed -
19 Sobic.003G310300 pentatricopeptide repeat domain containing protein, putative, expressed -
20 Sobic.005G001100 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -


Gene co-expression network
sample Sobic001G117600 Sobic001G117600 Sobic009G223500 Sobic009G223500 Sobic001G117600--Sobic009G223500 Sobic004G079500 Sobic004G079500 Sobic001G117600--Sobic004G079500 Sobic010G240001 Sobic010G240001 Sobic001G117600--Sobic010G240001 Sobic007G030800 Sobic007G030800 Sobic001G117600--Sobic007G030800 Sobic004G154700 Sobic004G154700 Sobic001G117600--Sobic004G154700 Sobic003G321600 Sobic003G321600 Sobic001G117600--Sobic003G321600 Sobic001G052800 Sobic001G052800 Sobic001G117600--Sobic001G052800 Sobic004G266900 Sobic004G266900 Sobic001G117600--Sobic004G266900 Sobic003G112900 Sobic003G112900 Sobic001G117600--Sobic003G112900 Sobic009G223500--Sobic001G052800 Sobic005G132000 Sobic005G132000 Sobic009G223500--Sobic005G132000 Sobic009G223500--Sobic001G117600 Sobic003G185600 Sobic003G185600 Sobic009G223500--Sobic003G185600 Sobic005G201000 Sobic005G201000 Sobic009G223500--Sobic005G201000 Sobic002G275200 Sobic002G275200 Sobic009G223500--Sobic002G275200 Sobic009G223500--Sobic004G154700 Sobic001G076400 Sobic001G076400 Sobic009G223500--Sobic001G076400 Sobic010G113200 Sobic010G113200 Sobic009G223500--Sobic010G113200 Sobic003G285700 Sobic003G285700 Sobic004G079500--Sobic003G285700 Sobic007G118050 Sobic007G118050 Sobic004G079500--Sobic007G118050 Sobic007G069101 Sobic007G069101 Sobic004G079500--Sobic007G069101 Sobic007G043700 Sobic007G043700 Sobic004G079500--Sobic007G043700 Sobic010G270100 Sobic010G270100 Sobic004G079500--Sobic010G270100 Sobic001G497000 Sobic001G497000 Sobic004G079500--Sobic001G497000 Sobic004G106250 Sobic004G106250 Sobic004G079500--Sobic004G106250 Sobic007G034200 Sobic007G034200 Sobic004G079500--Sobic007G034200 Sobic004G021000 Sobic004G021000 Sobic004G079500--Sobic004G021000 Sobic009G220500 Sobic009G220500 Sobic010G240001--Sobic009G220500 Sobic010G227100 Sobic010G227100 Sobic010G240001--Sobic010G227100 Sobic002G212500 Sobic002G212500 Sobic010G240001--Sobic002G212500 Sobic005G074000 Sobic005G074000 Sobic010G240001--Sobic005G074000 Sobic003G171200 Sobic003G171200 Sobic010G240001--Sobic003G171200 Sobic006G051800 Sobic006G051800 Sobic010G240001--Sobic006G051800 Sobic010G009200 Sobic010G009200 Sobic010G240001--Sobic010G009200 Sobic003G372500 Sobic003G372500 Sobic010G240001--Sobic003G372500 Sobic002G169400 Sobic002G169400 Sobic010G240001--Sobic002G169400 Sobic001G153300 Sobic001G153300 Sobic007G030800--Sobic001G153300 Sobic006G269800 Sobic006G269800 Sobic007G030800--Sobic006G269800 Sobic002G155000 Sobic002G155000 Sobic007G030800--Sobic002G155000 Sobic002G317100 Sobic002G317100 Sobic007G030800--Sobic002G317100 Sobic007G211800 Sobic007G211800 Sobic007G030800--Sobic007G211800 Sobic008G038600 Sobic008G038600 Sobic007G030800--Sobic008G038600 Sobic001G417500 Sobic001G417500 Sobic007G030800--Sobic001G417500 Sobic006G249500 Sobic006G249500 Sobic007G030800--Sobic006G249500 Sobic004G351800 Sobic004G351800 Sobic007G030800--Sobic004G351800 Sobic003G277400 Sobic003G277400 Sobic004G154700--Sobic003G277400 Sobic009G040400 Sobic009G040400 Sobic004G154700--Sobic009G040400 Sobic007G010800 Sobic007G010800 Sobic004G154700--Sobic007G010800 Sobic004G154700--Sobic005G132000 Sobic005G038500 Sobic005G038500 Sobic004G154700--Sobic005G038500 Sobic003G011900 Sobic003G011900 Sobic004G154700--Sobic003G011900 Sobic003G057233 Sobic003G057233 Sobic004G154700--Sobic003G057233 Sobic003G105900 Sobic003G105900 Sobic004G154700--Sobic003G105900 Sobic001G282800 Sobic001G282800 Sobic004G154700--Sobic001G282800 Sobic006G266700 Sobic006G266700 Sobic003G321600--Sobic006G266700 Sobic003G360300 Sobic003G360300 Sobic003G321600--Sobic003G360300 Sobic007G209600 Sobic007G209600 Sobic003G321600--Sobic007G209600 Sobic001G210000 Sobic001G210000 Sobic003G321600--Sobic001G210000 Sobic001G203500 Sobic001G203500 Sobic003G321600--Sobic001G203500 Sobic005G120700 Sobic005G120700 Sobic003G321600--Sobic005G120700 Sobic001G039300 Sobic001G039300 Sobic003G321600--Sobic001G039300 Sobic004G129500 Sobic004G129500 Sobic003G321600--Sobic004G129500 Sobic001G191900 Sobic001G191900 Sobic003G321600--Sobic001G191900 Sobic007G111400 Sobic007G111400 Sobic001G052800--Sobic007G111400 Sobic006G119400 Sobic006G119400 Sobic001G052800--Sobic006G119400 Sobic006G233700 Sobic006G233700 Sobic001G052800--Sobic006G233700 Sobic006G270200 Sobic006G270200 Sobic001G052800--Sobic006G270200 Sobic001G052800--Sobic005G132000 Sobic001G060500 Sobic001G060500 Sobic001G052800--Sobic001G060500 Sobic001G052800--Sobic005G038500 Sobic001G220000 Sobic001G220000 Sobic001G052800--Sobic001G220000 Sobic001G052800--Sobic009G223500 Sobic006G014100 Sobic006G014100 Sobic004G266900--Sobic006G014100 Sobic001G395100 Sobic001G395100 Sobic004G266900--Sobic001G395100 Sobic009G095100 Sobic009G095100 Sobic004G266900--Sobic009G095100 Sobic006G240100 Sobic006G240100 Sobic004G266900--Sobic006G240100 Sobic004G155600 Sobic004G155600 Sobic004G266900--Sobic004G155600 Sobic006G121300 Sobic006G121300 Sobic004G266900--Sobic006G121300 Sobic007G091600 Sobic007G091600 Sobic004G266900--Sobic007G091600 Sobic007G071200 Sobic007G071200 Sobic004G266900--Sobic007G071200 Sobic007G075900 Sobic007G075900 Sobic004G266900--Sobic007G075900 Sobic010G083500 Sobic010G083500 Sobic003G112900--Sobic010G083500 Sobic004G283700 Sobic004G283700 Sobic003G112900--Sobic004G283700 Sobic010G165500 Sobic010G165500 Sobic003G112900--Sobic010G165500 Sobic005G133900 Sobic005G133900 Sobic003G112900--Sobic005G133900 Sobic003G281500 Sobic003G281500 Sobic003G112900--Sobic003G281500 Sobic003G112900--Sobic001G117600 Sobic003G327100 Sobic003G327100 Sobic003G112900--Sobic003G327100 Sobic003G121800 Sobic003G121800 Sobic003G112900--Sobic003G121800 Sobic004G332900 Sobic004G332900 Sobic003G112900--Sobic004G332900
Octagon: transcription factors


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