Gene annotation
Transcriptome id Sobic.001G052800.1
Synonym Sb01g004855, emb1967
Functional annotation FHA domain containing protein, putative, expressed
UniProt A0A1B6QHE3
Pfam PF00498 PF13325
Panther DB PTHR13233 PTHR13233:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G54350 : Forkhead-associated (FHA) domain-containing protein
RAP-DB (Rice) LOC_Os03g58640.1 : FHA domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016547
Brachypodium KQK12651
Barley HORVU5Hr1G107190.9 , HORVU5Hr1G107190.12 , HORVU5Hr1G107190.11 , HORVU5Hr1G107190.10 , HORVU5Hr1G107190.8 , HORVU5Hr1G107190.7 , HORVU5Hr1G107190.6 , HORVU5Hr1G107190.5 , HORVU5Hr1G107190.4 , HORVU5Hr1G107190.3 , HORVU5Hr1G107190.2 , HORVU5Hr1G107190.1
Wheat TraesCS5B02G452800 , TraesCS5B02G452800 , TraesCS5A02G448100 , TraesCS5B02G455800 , TraesCS5D02G454900
Populus -


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cDNA sequences
Sobic.001G052800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G111400 - -
2 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
3 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
4 Sobic.006G270200 smr domain containing protein, expressed K07456: DNA mismatch repair protein MutS2
5 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
6 Sobic.001G060500 YT521-B, putative, expressed -
7 Sobic.005G038500 pentatricopeptide containing protein, putative, expressed -
8 Sobic.001G220000 PPR repeat containing protein, expressed -
9 Sobic.009G223500 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.005G201000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
11 Sobic.002G275200 PPR repeat containing protein, expressed -
12 Sobic.001G028100 - -
13 Sobic.004G154700 choline/ethanolamine kinase, putative, expressed -
14 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
15 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
16 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
17 Sobic.005G074000 OsFBX411 - F-box domain containing protein, expressed -
18 Sobic.004G178500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 7, putative, expressed K14486: K14486, auxin response factor
19 Sobic.001G298900 agenet domain containing protein, putative, expressed -
20 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42


Gene co-expression network
sample Sobic001G052800 Sobic001G052800 Sobic007G111400 Sobic007G111400 Sobic001G052800--Sobic007G111400 Sobic006G119400 Sobic006G119400 Sobic001G052800--Sobic006G119400 Sobic006G233700 Sobic006G233700 Sobic001G052800--Sobic006G233700 Sobic006G270200 Sobic006G270200 Sobic001G052800--Sobic006G270200 Sobic005G132000 Sobic005G132000 Sobic001G052800--Sobic005G132000 Sobic001G060500 Sobic001G060500 Sobic001G052800--Sobic001G060500 Sobic005G038500 Sobic005G038500 Sobic001G052800--Sobic005G038500 Sobic001G220000 Sobic001G220000 Sobic001G052800--Sobic001G220000 Sobic009G223500 Sobic009G223500 Sobic001G052800--Sobic009G223500 Sobic002G198200 Sobic002G198200 Sobic007G111400--Sobic002G198200 Sobic006G270700 Sobic006G270700 Sobic007G111400--Sobic006G270700 Sobic005G142800 Sobic005G142800 Sobic007G111400--Sobic005G142800 Sobic001G298900 Sobic001G298900 Sobic007G111400--Sobic001G298900 Sobic006G219600 Sobic006G219600 Sobic007G111400--Sobic006G219600 Sobic002G345700 Sobic002G345700 Sobic007G111400--Sobic002G345700 Sobic003G388100 Sobic003G388100 Sobic007G111400--Sobic003G388100 Sobic004G146600 Sobic004G146600 Sobic007G111400--Sobic004G146600 Sobic005G075100 Sobic005G075100 Sobic007G111400--Sobic005G075100 Sobic010G079500 Sobic010G079500 Sobic006G119400--Sobic010G079500 Sobic006G119400--Sobic005G142800 Sobic004G107200 Sobic004G107200 Sobic006G119400--Sobic004G107200 Sobic010G053600 Sobic010G053600 Sobic006G119400--Sobic010G053600 Sobic002G043100 Sobic002G043100 Sobic006G119400--Sobic002G043100 Sobic006G049900 Sobic006G049900 Sobic006G119400--Sobic006G049900 Sobic008G132900 Sobic008G132900 Sobic006G119400--Sobic008G132900 Sobic008G016300 Sobic008G016300 Sobic006G119400--Sobic008G016300 Sobic006G119400--Sobic001G298900 Sobic006G232600 Sobic006G232600 Sobic006G233700--Sobic006G232600 Sobic001G500600 Sobic001G500600 Sobic006G233700--Sobic001G500600 Sobic010G110400 Sobic010G110400 Sobic006G233700--Sobic010G110400 Sobic009G170200 Sobic009G170200 Sobic006G233700--Sobic009G170200 Sobic006G233700--Sobic001G060500 Sobic003G203300 Sobic003G203300 Sobic006G233700--Sobic003G203300 Sobic010G171600 Sobic010G171600 Sobic006G233700--Sobic010G171600 Sobic003G070900 Sobic003G070900 Sobic006G233700--Sobic003G070900 Sobic001G219700 Sobic001G219700 Sobic006G233700--Sobic001G219700 Sobic001G028100 Sobic001G028100 Sobic006G270200--Sobic001G028100 Sobic003G352500 Sobic003G352500 Sobic006G270200--Sobic003G352500 Sobic001G054100 Sobic001G054100 Sobic006G270200--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic006G270200--Sobic008G039600 Sobic002G181000 Sobic002G181000 Sobic006G270200--Sobic002G181000 Sobic010G002000 Sobic010G002000 Sobic006G270200--Sobic010G002000 Sobic006G270200--Sobic001G220000 Sobic003G094350 Sobic003G094350 Sobic006G270200--Sobic003G094350 Sobic003G232700 Sobic003G232700 Sobic006G270200--Sobic003G232700 Sobic003G029500 Sobic003G029500 Sobic005G132000--Sobic003G029500 Sobic005G201000 Sobic005G201000 Sobic005G132000--Sobic005G201000 Sobic009G259100 Sobic009G259100 Sobic005G132000--Sobic009G259100 Sobic009G040400 Sobic009G040400 Sobic005G132000--Sobic009G040400 Sobic007G010800 Sobic007G010800 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic002G295100 Sobic002G295100 Sobic005G132000--Sobic002G295100 Sobic003G003450 Sobic003G003450 Sobic005G132000--Sobic003G003450 Sobic001G060500--Sobic006G233700 Sobic004G179400 Sobic004G179400 Sobic001G060500--Sobic004G179400 Sobic002G073200 Sobic002G073200 Sobic001G060500--Sobic002G073200 Sobic003G190000 Sobic003G190000 Sobic001G060500--Sobic003G190000 Sobic001G060500--Sobic003G203300 Sobic002G173100 Sobic002G173100 Sobic001G060500--Sobic002G173100 Sobic001G060500--Sobic010G110400 Sobic003G125900 Sobic003G125900 Sobic001G060500--Sobic003G125900 Sobic003G108900 Sobic003G108900 Sobic001G060500--Sobic003G108900 Sobic005G038500--Sobic004G146600 Sobic005G038500--Sobic010G132600 Sobic003G107500 Sobic003G107500 Sobic005G038500--Sobic003G107500 Sobic003G105900 Sobic003G105900 Sobic005G038500--Sobic003G105900 Sobic005G187300 Sobic005G187300 Sobic005G038500--Sobic005G187300 Sobic010G014100 Sobic010G014100 Sobic005G038500--Sobic010G014100 Sobic003G310300 Sobic003G310300 Sobic005G038500--Sobic003G310300 Sobic001G094600 Sobic001G094600 Sobic005G038500--Sobic001G094600 Sobic004G001500 Sobic004G001500 Sobic005G038500--Sobic004G001500 Sobic004G124400 Sobic004G124400 Sobic001G220000--Sobic004G124400 Sobic004G317700 Sobic004G317700 Sobic001G220000--Sobic004G317700 Sobic004G300100 Sobic004G300100 Sobic001G220000--Sobic004G300100 Sobic006G108200 Sobic006G108200 Sobic001G220000--Sobic006G108200 Sobic002G356900 Sobic002G356900 Sobic001G220000--Sobic002G356900 Sobic010G231500 Sobic010G231500 Sobic001G220000--Sobic010G231500 Sobic001G436400 Sobic001G436400 Sobic001G220000--Sobic001G436400 Sobic004G154800 Sobic004G154800 Sobic001G220000--Sobic004G154800 Sobic002G351600 Sobic002G351600 Sobic001G220000--Sobic002G351600 Sobic009G223500--Sobic001G052800 Sobic009G223500--Sobic005G132000 Sobic001G117600 Sobic001G117600 Sobic009G223500--Sobic001G117600 Sobic003G185600 Sobic003G185600 Sobic009G223500--Sobic003G185600 Sobic009G223500--Sobic005G201000 Sobic002G275200 Sobic002G275200 Sobic009G223500--Sobic002G275200 Sobic004G154700 Sobic004G154700 Sobic009G223500--Sobic004G154700 Sobic001G076400 Sobic001G076400 Sobic009G223500--Sobic001G076400 Sobic010G113200 Sobic010G113200 Sobic009G223500--Sobic010G113200
Octagon: transcription factors


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