Gene annotation
Transcriptome id Sobic.009G223500.3,Sobic.009G223500.1,Sobic.009G223500.2
Synonym Sb09g027710,
Functional annotation - (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5R4N7 , C5YV26 , A0A1B6P9V7
Pfam -
Panther DB PTHR36062 PTHR36062:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G34550 : F-box family protein
RAP-DB (Rice) LOC_Os01g49310.1,LOC_Os01g49310.2 : expressed protein
MaizeGDB (Corn) Zm00025a036537 , Zm00025a044479
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G052800 FHA domain containing protein, putative, expressed -
2 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
3 Sobic.001G117600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.003G185600 asp/Glu racemase, putative, expressed -
5 Sobic.005G201000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
6 Sobic.002G275200 PPR repeat containing protein, expressed -
7 Sobic.004G154700 choline/ethanolamine kinase, putative, expressed -
8 Sobic.001G076400 H-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
9 Sobic.010G113200 UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed -
10 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
11 Sobic.009G231800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@auxin response factor 15, putative, expressed K14486: K14486, auxin response factor
12 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
13 Sobic.005G038500 pentatricopeptide containing protein, putative, expressed -
14 Sobic.003G298200 dehydrogenase, putative, expressed -
15 Sobic.002G275100 response regulator receiver domain containing protein, expressed K12130: pseudo-response regulator 5
16 Sobic.008G002400 expressed protein -
17 Sobic.009G259100 CCT motif family protein, expressed -
18 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
19 Sobic.004G124601 - -
20 Sobic.002G138100 ACT domain containing protein, expressed -


Gene co-expression network
sample Sobic009G223500 Sobic009G223500 Sobic001G052800 Sobic001G052800 Sobic009G223500--Sobic001G052800 Sobic005G132000 Sobic005G132000 Sobic009G223500--Sobic005G132000 Sobic001G117600 Sobic001G117600 Sobic009G223500--Sobic001G117600 Sobic003G185600 Sobic003G185600 Sobic009G223500--Sobic003G185600 Sobic005G201000 Sobic005G201000 Sobic009G223500--Sobic005G201000 Sobic002G275200 Sobic002G275200 Sobic009G223500--Sobic002G275200 Sobic004G154700 Sobic004G154700 Sobic009G223500--Sobic004G154700 Sobic001G076400 Sobic001G076400 Sobic009G223500--Sobic001G076400 Sobic010G113200 Sobic010G113200 Sobic009G223500--Sobic010G113200 Sobic007G111400 Sobic007G111400 Sobic001G052800--Sobic007G111400 Sobic006G119400 Sobic006G119400 Sobic001G052800--Sobic006G119400 Sobic006G233700 Sobic006G233700 Sobic001G052800--Sobic006G233700 Sobic006G270200 Sobic006G270200 Sobic001G052800--Sobic006G270200 Sobic001G052800--Sobic005G132000 Sobic001G060500 Sobic001G060500 Sobic001G052800--Sobic001G060500 Sobic005G038500 Sobic005G038500 Sobic001G052800--Sobic005G038500 Sobic001G220000 Sobic001G220000 Sobic001G052800--Sobic001G220000 Sobic001G052800--Sobic009G223500 Sobic003G029500 Sobic003G029500 Sobic005G132000--Sobic003G029500 Sobic005G132000--Sobic005G201000 Sobic009G259100 Sobic009G259100 Sobic005G132000--Sobic009G259100 Sobic009G040400 Sobic009G040400 Sobic005G132000--Sobic009G040400 Sobic007G010800 Sobic007G010800 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic002G295100 Sobic002G295100 Sobic005G132000--Sobic002G295100 Sobic003G003450 Sobic003G003450 Sobic005G132000--Sobic003G003450 Sobic001G117600--Sobic009G223500 Sobic004G079500 Sobic004G079500 Sobic001G117600--Sobic004G079500 Sobic010G240001 Sobic010G240001 Sobic001G117600--Sobic010G240001 Sobic007G030800 Sobic007G030800 Sobic001G117600--Sobic007G030800 Sobic001G117600--Sobic004G154700 Sobic003G321600 Sobic003G321600 Sobic001G117600--Sobic003G321600 Sobic001G117600--Sobic001G052800 Sobic004G266900 Sobic004G266900 Sobic001G117600--Sobic004G266900 Sobic003G112900 Sobic003G112900 Sobic001G117600--Sobic003G112900 Sobic003G185600--Sobic007G010800 Sobic007G087100 Sobic007G087100 Sobic003G185600--Sobic007G087100 Sobic008G088821 Sobic008G088821 Sobic003G185600--Sobic008G088821 Sobic003G185600--Sobic001G220000 Sobic005G028800 Sobic005G028800 Sobic003G185600--Sobic005G028800 Sobic001G436400 Sobic001G436400 Sobic003G185600--Sobic001G436400 Sobic002G356900 Sobic002G356900 Sobic003G185600--Sobic002G356900 Sobic001G015200 Sobic001G015200 Sobic003G185600--Sobic001G015200 Sobic003G186800 Sobic003G186800 Sobic003G185600--Sobic003G186800 Sobic005G201000--Sobic003G029500 Sobic005G201000--Sobic005G132000 Sobic005G201000--Sobic009G040400 Sobic006G051800 Sobic006G051800 Sobic005G201000--Sobic006G051800 Sobic005G201000--Sobic007G010800 Sobic010G150100 Sobic010G150100 Sobic005G201000--Sobic010G150100 Sobic010G092350 Sobic010G092350 Sobic005G201000--Sobic010G092350 Sobic003G057233 Sobic003G057233 Sobic005G201000--Sobic003G057233 Sobic001G298900 Sobic001G298900 Sobic005G201000--Sobic001G298900 Sobic002G275200--Sobic009G040400 Sobic008G002400 Sobic008G002400 Sobic002G275200--Sobic008G002400 Sobic002G275200--Sobic009G259100 Sobic002G275100 Sobic002G275100 Sobic002G275200--Sobic002G275100 Sobic005G002400 Sobic005G002400 Sobic002G275200--Sobic005G002400 Sobic002G275200--Sobic005G132000 Sobic010G178000 Sobic010G178000 Sobic002G275200--Sobic010G178000 Sobic002G275200--Sobic002G356900 Sobic002G275200--Sobic003G029500 Sobic003G277400 Sobic003G277400 Sobic004G154700--Sobic003G277400 Sobic004G154700--Sobic009G040400 Sobic004G154700--Sobic007G010800 Sobic004G154700--Sobic005G132000 Sobic004G154700--Sobic005G038500 Sobic003G011900 Sobic003G011900 Sobic004G154700--Sobic003G011900 Sobic004G154700--Sobic003G057233 Sobic003G105900 Sobic003G105900 Sobic004G154700--Sobic003G105900 Sobic001G282800 Sobic001G282800 Sobic004G154700--Sobic001G282800 Sobic001G261545 Sobic001G261545 Sobic001G076400--Sobic001G261545 Sobic009G103000 Sobic009G103000 Sobic001G076400--Sobic009G103000 Sobic001G076400--Sobic007G010800 Sobic002G138100 Sobic002G138100 Sobic001G076400--Sobic002G138100 Sobic001G076400--Sobic005G132000 Sobic001G076400--Sobic006G233700 Sobic008G077500 Sobic008G077500 Sobic001G076400--Sobic008G077500 Sobic001G076400--Sobic003G003450 Sobic006G232600 Sobic006G232600 Sobic001G076400--Sobic006G232600 Sobic001G112900 Sobic001G112900 Sobic010G113200--Sobic001G112900 Sobic003G339200 Sobic003G339200 Sobic010G113200--Sobic003G339200 Sobic003G304300 Sobic003G304300 Sobic010G113200--Sobic003G304300 Sobic009G246400 Sobic009G246400 Sobic010G113200--Sobic009G246400 Sobic010G113200--Sobic005G002400 Sobic002G161400 Sobic002G161400 Sobic010G113200--Sobic002G161400 Sobic002G351200 Sobic002G351200 Sobic010G113200--Sobic002G351200 Sobic004G344600 Sobic004G344600 Sobic010G113200--Sobic004G344600 Sobic003G162400 Sobic003G162400 Sobic010G113200--Sobic003G162400
Octagon: transcription factors


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