Gene annotation
Transcriptome id Sobic.001G141100.2,Sobic.001G141100.1
Synonym Sb01g012280
Functional annotation helix-loop-helix DNA-binding protein, putative, expressed
UniProt C5WQ91 , A0A1Z5S5K3
Pfam PF00010
Panther DB PTHR11514 PTHR11514:SF48
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37850 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g46860.1 : helix-loop-helix DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a007507 , Zm00025a007506
Brachypodium -
Barley -
Wheat TraesCS3A02G019100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
3 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
4 Sobic.002G132400 -(PubMedID : 26465154)@expressed protein -
5 Sobic.010G207100 methyltransferase domain containing protein, putative, expressed -
6 Sobic.010G138800 phosphate transporter 1, putative, expressed -
7 Sobic.003G304300 expressed protein -
8 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.001G411100 expressed protein -
10 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
11 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
12 Sobic.009G123300 NAD dependent epimerase/dehydratase family protein, putative, expressed K06118: SQD1, UDP-sulfoquinovose synthase
13 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
14 Sobic.002G072500 expressed protein -
15 Sobic.007G016600 expressed protein -
16 Sobic.009G004100 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
17 Sobic.003G012400 flavin monooxygenase, putative, expressed -
18 Sobic.009G246400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyprenyl synthetase, putative, expressed K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
19 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
20 Sobic.007G124500 methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G141100 Sobic001G141100 Sobic002G351200 Sobic002G351200 Sobic001G141100--Sobic002G351200 Sobic010G100900 Sobic010G100900 Sobic001G141100--Sobic010G100900 Sobic004G268400 Sobic004G268400 Sobic001G141100--Sobic004G268400 Sobic002G132400 Sobic002G132400 Sobic001G141100--Sobic002G132400 Sobic010G207100 Sobic010G207100 Sobic001G141100--Sobic010G207100 Sobic010G138800 Sobic010G138800 Sobic001G141100--Sobic010G138800 Sobic003G304300 Sobic003G304300 Sobic001G141100--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic001G141100--Sobic004G267700 Sobic001G411100 Sobic001G411100 Sobic001G141100--Sobic001G411100 Sobic002G351200--Sobic010G100900 Sobic001G018000 Sobic001G018000 Sobic002G351200--Sobic001G018000 Sobic002G351200--Sobic003G304300 Sobic002G351200--Sobic004G268400 Sobic002G351200--Sobic004G267700 Sobic010G101000 Sobic010G101000 Sobic002G351200--Sobic010G101000 Sobic002G351200--Sobic002G132400 Sobic003G186800 Sobic003G186800 Sobic002G351200--Sobic003G186800 Sobic002G213400 Sobic002G213400 Sobic002G351200--Sobic002G213400 Sobic010G100900--Sobic002G351200 Sobic003G380200 Sobic003G380200 Sobic010G100900--Sobic003G380200 Sobic010G100900--Sobic002G132400 Sobic010G100900--Sobic004G268400 Sobic010G100900--Sobic003G304300 Sobic010G100900--Sobic004G267700 Sobic004G271600 Sobic004G271600 Sobic010G100900--Sobic004G271600 Sobic002G356900 Sobic002G356900 Sobic010G100900--Sobic002G356900 Sobic004G128900 Sobic004G128900 Sobic010G100900--Sobic004G128900 Sobic004G268400--Sobic004G267700 Sobic007G016600 Sobic007G016600 Sobic004G268400--Sobic007G016600 Sobic004G268400--Sobic001G018000 Sobic004G268400--Sobic002G351200 Sobic004G268400--Sobic003G304300 Sobic004G268400--Sobic003G186800 Sobic004G268400--Sobic010G100900 Sobic004G268400--Sobic010G101000 Sobic004G268400--Sobic003G380200 Sobic002G132400--Sobic004G271600 Sobic002G132400--Sobic010G100900 Sobic002G132400--Sobic002G351200 Sobic001G509200 Sobic001G509200 Sobic002G132400--Sobic001G509200 Sobic007G135800 Sobic007G135800 Sobic002G132400--Sobic007G135800 Sobic002G132400--Sobic003G380200 Sobic007G124500 Sobic007G124500 Sobic002G132400--Sobic007G124500 Sobic002G132400--Sobic004G268400 Sobic002G408000 Sobic002G408000 Sobic002G132400--Sobic002G408000 Sobic010G207100--Sobic007G016600 Sobic010G207100--Sobic002G213400 Sobic010G207100--Sobic002G351200 Sobic010G207100--Sobic001G018000 Sobic010G207100--Sobic001G411100 Sobic010G207100--Sobic007G124500 Sobic010G207100--Sobic004G268400 Sobic010G207100--Sobic010G100900 Sobic010G207100--Sobic002G356900 Sobic006G235400 Sobic006G235400 Sobic010G138800--Sobic006G235400 Sobic002G072500 Sobic002G072500 Sobic010G138800--Sobic002G072500 Sobic010G138800--Sobic004G128900 Sobic001G180200 Sobic001G180200 Sobic010G138800--Sobic001G180200 Sobic001G317800 Sobic001G317800 Sobic010G138800--Sobic001G317800 Sobic010G138800--Sobic007G135800 Sobic001G470300 Sobic001G470300 Sobic010G138800--Sobic001G470300 Sobic009G038701 Sobic009G038701 Sobic010G138800--Sobic009G038701 Sobic010G231300 Sobic010G231300 Sobic010G138800--Sobic010G231300 Sobic003G304300--Sobic004G267700 Sobic006G191500 Sobic006G191500 Sobic003G304300--Sobic006G191500 Sobic003G304300--Sobic002G351200 Sobic002G161400 Sobic002G161400 Sobic003G304300--Sobic002G161400 Sobic004G344600 Sobic004G344600 Sobic003G304300--Sobic004G344600 Sobic001G112900 Sobic001G112900 Sobic003G304300--Sobic001G112900 Sobic003G304300--Sobic003G186800 Sobic003G304300--Sobic003G380200 Sobic003G304300--Sobic004G268400 Sobic004G267700--Sobic004G268400 Sobic004G267700--Sobic003G304300 Sobic004G267700--Sobic010G101000 Sobic004G267700--Sobic007G016600 Sobic004G267700--Sobic003G380200 Sobic004G267700--Sobic002G351200 Sobic004G267700--Sobic001G018000 Sobic004G267700--Sobic003G186800 Sobic004G267700--Sobic010G100900 Sobic001G411100--Sobic007G124500 Sobic001G411100--Sobic001G018000 Sobic002G030900 Sobic002G030900 Sobic001G411100--Sobic002G030900 Sobic001G104700 Sobic001G104700 Sobic001G411100--Sobic001G104700 Sobic001G411100--Sobic004G268400 Sobic001G411100--Sobic010G101000 Sobic003G103300 Sobic003G103300 Sobic001G411100--Sobic003G103300 Sobic001G411100--Sobic002G351200 Sobic001G411100--Sobic004G267700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.