Gene annotation
Transcriptome id Sobic.001G153400.1,Sobic.001G153400.2
Synonym ATMBD11, Sb01g013320, MBD11
Functional annotation methyl-CpG binding domain containing protein, putative, expressed
UniProt C5WR47 , A0A1Z5S5Q1
Pfam PF01429
Panther DB PTHR33729
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G15790 : methyl-CPG-binding domain 11
RAP-DB (Rice) LOC_Os12g42550.1 : methyl-CpG binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a031316 , Zm00025a017239 , Zm00025a007232
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G153400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G317300 CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
2 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
3 Sobic.006G270900 acyl-CoA-binding domain-containing protein 6, putative, expressed -
4 Sobic.003G010400 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
5 Sobic.009G238850 - -
6 Sobic.002G113900 lipid binding protein, putative, expressed -
7 Sobic.002G143900 OsFBL19 - F-box domain and LRR containing protein, expressed K10273: F-box and leucine-rich repeat protein 7
8 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8
9 Sobic.006G032900 endonuclease/exonuclease/phosphatase family protein, putative, expressed -
10 Sobic.002G008500 Ser/Thr protein phosphatase family protein, putative, expressed -
11 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
12 Sobic.003G340900 SAG20, putative, expressed -
13 Sobic.009G046700 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
14 Sobic.001G053800 expressed protein -
15 Sobic.001G429300 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13414: mitogen-activated protein kinase kinase kinase 1
16 Sobic.007G086500 expressed protein K16584: HAUS augmin-like complex subunit 1
17 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
18 Sobic.008G004400 GIL1, putative, expressed -
19 Sobic.010G249300 Ser/Thr protein phosphatase family protein, putative, expressed -
20 Sobic.001G078100 expressed protein -


Gene co-expression network
sample Sobic001G153400 Sobic001G153400 Sobic002G317300 Sobic002G317300 Sobic001G153400--Sobic002G317300 Sobic004G301900 Sobic004G301900 Sobic001G153400--Sobic004G301900 Sobic006G270900 Sobic006G270900 Sobic001G153400--Sobic006G270900 Sobic003G010400 Sobic003G010400 Sobic001G153400--Sobic003G010400 Sobic009G238850 Sobic009G238850 Sobic001G153400--Sobic009G238850 Sobic002G113900 Sobic002G113900 Sobic001G153400--Sobic002G113900 Sobic002G143900 Sobic002G143900 Sobic001G153400--Sobic002G143900 Sobic008G139700 Sobic008G139700 Sobic001G153400--Sobic008G139700 Sobic006G032900 Sobic006G032900 Sobic001G153400--Sobic006G032900 Sobic009G199200 Sobic009G199200 Sobic002G317300--Sobic009G199200 Sobic010G249300 Sobic010G249300 Sobic002G317300--Sobic010G249300 Sobic010G146600 Sobic010G146600 Sobic002G317300--Sobic010G146600 Sobic001G281600 Sobic001G281600 Sobic002G317300--Sobic001G281600 Sobic002G317300--Sobic006G032900 Sobic002G166300 Sobic002G166300 Sobic002G317300--Sobic002G166300 Sobic008G083000 Sobic008G083000 Sobic002G317300--Sobic008G083000 Sobic007G067700 Sobic007G067700 Sobic002G317300--Sobic007G067700 Sobic010G279700 Sobic010G279700 Sobic002G317300--Sobic010G279700 Sobic010G090900 Sobic010G090900 Sobic004G301900--Sobic010G090900 Sobic003G250500 Sobic003G250500 Sobic004G301900--Sobic003G250500 Sobic004G301900--Sobic002G113900 Sobic004G059000 Sobic004G059000 Sobic004G301900--Sobic004G059000 Sobic004G253000 Sobic004G253000 Sobic004G301900--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic004G301900--Sobic001G512600 Sobic007G019800 Sobic007G019800 Sobic004G301900--Sobic007G019800 Sobic001G051200 Sobic001G051200 Sobic004G301900--Sobic001G051200 Sobic004G356900 Sobic004G356900 Sobic004G301900--Sobic004G356900 Sobic002G268400 Sobic002G268400 Sobic006G270900--Sobic002G268400 Sobic006G270900--Sobic002G113900 Sobic006G270900--Sobic001G281600 Sobic006G270900--Sobic004G356900 Sobic006G270900--Sobic010G279700 Sobic003G405700 Sobic003G405700 Sobic006G270900--Sobic003G405700 Sobic010G057900 Sobic010G057900 Sobic006G270900--Sobic010G057900 Sobic009G004600 Sobic009G004600 Sobic006G270900--Sobic009G004600 Sobic001G143500 Sobic001G143500 Sobic006G270900--Sobic001G143500 Sobic002G161800 Sobic002G161800 Sobic003G010400--Sobic002G161800 Sobic008G046500 Sobic008G046500 Sobic003G010400--Sobic008G046500 Sobic003G264200 Sobic003G264200 Sobic003G010400--Sobic003G264200 Sobic010G251000 Sobic010G251000 Sobic003G010400--Sobic010G251000 Sobic003G010400--Sobic007G019800 Sobic009G005900 Sobic009G005900 Sobic003G010400--Sobic009G005900 Sobic010G068500 Sobic010G068500 Sobic003G010400--Sobic010G068500 Sobic001G080700 Sobic001G080700 Sobic003G010400--Sobic001G080700 Sobic001G007000 Sobic001G007000 Sobic003G010400--Sobic001G007000 Sobic010G262000 Sobic010G262000 Sobic009G238850--Sobic010G262000 Sobic001G186800 Sobic001G186800 Sobic009G238850--Sobic001G186800 Sobic004G257100 Sobic004G257100 Sobic009G238850--Sobic004G257100 Sobic001G298600 Sobic001G298600 Sobic009G238850--Sobic001G298600 Sobic009G238850--Sobic001G281600 Sobic008G004600 Sobic008G004600 Sobic009G238850--Sobic008G004600 Sobic002G359400 Sobic002G359400 Sobic009G238850--Sobic002G359400 Sobic008G051200 Sobic008G051200 Sobic009G238850--Sobic008G051200 Sobic009G238850--Sobic006G032900 Sobic002G113900--Sobic006G270900 Sobic002G113900--Sobic009G004600 Sobic004G226800 Sobic004G226800 Sobic002G113900--Sobic004G226800 Sobic006G049700 Sobic006G049700 Sobic002G113900--Sobic006G049700 Sobic002G113900--Sobic004G356900 Sobic002G113900--Sobic004G301900 Sobic002G113900--Sobic007G019800 Sobic004G104900 Sobic004G104900 Sobic002G113900--Sobic004G104900 Sobic002G113900--Sobic002G268400 Sobic006G233300 Sobic006G233300 Sobic002G143900--Sobic006G233300 Sobic002G280600 Sobic002G280600 Sobic002G143900--Sobic002G280600 Sobic002G394800 Sobic002G394800 Sobic002G143900--Sobic002G394800 Sobic007G027700 Sobic007G027700 Sobic002G143900--Sobic007G027700 Sobic002G143900--Sobic001G143500 Sobic006G044000 Sobic006G044000 Sobic002G143900--Sobic006G044000 Sobic001G526300 Sobic001G526300 Sobic002G143900--Sobic001G526300 Sobic010G232900 Sobic010G232900 Sobic002G143900--Sobic010G232900 Sobic002G143900--Sobic008G139700 Sobic002G313500 Sobic002G313500 Sobic008G139700--Sobic002G313500 Sobic010G017800 Sobic010G017800 Sobic008G139700--Sobic010G017800 Sobic001G080000 Sobic001G080000 Sobic008G139700--Sobic001G080000 Sobic008G139700--Sobic001G143500 Sobic002G180000 Sobic002G180000 Sobic008G139700--Sobic002G180000 Sobic003G045400 Sobic003G045400 Sobic008G139700--Sobic003G045400 Sobic007G205000 Sobic007G205000 Sobic008G139700--Sobic007G205000 Sobic006G267300 Sobic006G267300 Sobic008G139700--Sobic006G267300 Sobic010G105600 Sobic010G105600 Sobic008G139700--Sobic010G105600 Sobic001G362200 Sobic001G362200 Sobic006G032900--Sobic001G362200 Sobic003G109700 Sobic003G109700 Sobic006G032900--Sobic003G109700 Sobic001G518400 Sobic001G518400 Sobic006G032900--Sobic001G518400 Sobic006G032900--Sobic002G317300 Sobic001G226700 Sobic001G226700 Sobic006G032900--Sobic001G226700 Sobic006G032900--Sobic008G083000 Sobic003G401100 Sobic003G401100 Sobic006G032900--Sobic003G401100 Sobic001G102700 Sobic001G102700 Sobic006G032900--Sobic001G102700 Sobic009G103600 Sobic009G103600 Sobic006G032900--Sobic009G103600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.