Gene annotation
Transcriptome id Sobic.001G165000.1
Synonym REM39, VRN1
Functional annotation B3 DNA binding domain containing protein
UniProt C5WS84
Pfam PF02362
Panther DB PTHR31920 PTHR31920:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G18990 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os03g42410.1 : B3 DNA binding domain containing protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G165000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G253800 - -
2 Sobic.004G072200 expressed protein K15131: mediator of RNA polymerase II transcription subunit 11
3 Sobic.010G038100 OsFBDUF30 - F-box and DUF domain containing protein, expressed -
4 Sobic.008G014801 - -
5 Sobic.001G286500 expressed protein -
6 Sobic.001G172200 - -
7 Sobic.009G024400 ZOS5-03 - C2H2 zinc finger protein, expressed K09191: general transcription factor IIIA
8 Sobic.002G302900 calmodulin-binding heat-shock protein, putative, expressed -
9 Sobic.002G344000 expressed protein -
10 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
11 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
12 Sobic.003G253600 protein kinase domain containing protein, expressed -
13 Sobic.001G518100 DNA-binding bromodomain-containing protein, putative, expressed K11723: bromodomain-containing protein 7
14 Sobic.001G393900 FAD binding domain containing protein, expressed -
15 Sobic.003G428100 FYVE zinc finger domain containing protein, expressed -
16 Sobic.008G002500 RCD1, putative, expressed -
17 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
18 Sobic.003G294300 S4 domain containing protein, putative, expressed -
19 Sobic.004G344000 expressed protein -
20 Sobic.010G009800 OsFBX182 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic001G165000 Sobic001G165000 Sobic001G253800 Sobic001G253800 Sobic001G165000--Sobic001G253800 Sobic004G072200 Sobic004G072200 Sobic001G165000--Sobic004G072200 Sobic010G038100 Sobic010G038100 Sobic001G165000--Sobic010G038100 Sobic008G014801 Sobic008G014801 Sobic001G165000--Sobic008G014801 Sobic001G286500 Sobic001G286500 Sobic001G165000--Sobic001G286500 Sobic001G172200 Sobic001G172200 Sobic001G165000--Sobic001G172200 Sobic009G024400 Sobic009G024400 Sobic001G165000--Sobic009G024400 Sobic002G302900 Sobic002G302900 Sobic001G165000--Sobic002G302900 Sobic002G344000 Sobic002G344000 Sobic001G165000--Sobic002G344000 Sobic001G253800--Sobic001G165000 Sobic001G262100 Sobic001G262100 Sobic001G253800--Sobic001G262100 Sobic010G243700 Sobic010G243700 Sobic001G253800--Sobic010G243700 Sobic001G262200 Sobic001G262200 Sobic001G253800--Sobic001G262200 Sobic010G243600 Sobic010G243600 Sobic001G253800--Sobic010G243600 Sobic004G032100 Sobic004G032100 Sobic001G253800--Sobic004G032100 Sobic008G139000 Sobic008G139000 Sobic001G253800--Sobic008G139000 Sobic004G096801 Sobic004G096801 Sobic001G253800--Sobic004G096801 Sobic006G200800 Sobic006G200800 Sobic001G253800--Sobic006G200800 Sobic006G240100 Sobic006G240100 Sobic004G072200--Sobic006G240100 Sobic006G267600 Sobic006G267600 Sobic004G072200--Sobic006G267600 Sobic003G297500 Sobic003G297500 Sobic004G072200--Sobic003G297500 Sobic001G542450 Sobic001G542450 Sobic004G072200--Sobic001G542450 Sobic002G154000 Sobic002G154000 Sobic004G072200--Sobic002G154000 Sobic006G281700 Sobic006G281700 Sobic004G072200--Sobic006G281700 Sobic002G051750 Sobic002G051750 Sobic004G072200--Sobic002G051750 Sobic003G416700 Sobic003G416700 Sobic004G072200--Sobic003G416700 Sobic006G270600 Sobic006G270600 Sobic004G072200--Sobic006G270600 Sobic005G200900 Sobic005G200900 Sobic010G038100--Sobic005G200900 Sobic010G026600 Sobic010G026600 Sobic010G038100--Sobic010G026600 Sobic001G440100 Sobic001G440100 Sobic010G038100--Sobic001G440100 Sobic004G235300 Sobic004G235300 Sobic010G038100--Sobic004G235300 Sobic006G080400 Sobic006G080400 Sobic010G038100--Sobic006G080400 Sobic008G002500 Sobic008G002500 Sobic010G038100--Sobic008G002500 Sobic001G501800 Sobic001G501800 Sobic010G038100--Sobic001G501800 Sobic003G101700 Sobic003G101700 Sobic010G038100--Sobic003G101700 Sobic009G185700 Sobic009G185700 Sobic010G038100--Sobic009G185700 Sobic010G102600 Sobic010G102600 Sobic008G014801--Sobic010G102600 Sobic001G052400 Sobic001G052400 Sobic008G014801--Sobic001G052400 Sobic001G376900 Sobic001G376900 Sobic008G014801--Sobic001G376900 Sobic003G441900 Sobic003G441900 Sobic008G014801--Sobic003G441900 Sobic004G320500 Sobic004G320500 Sobic008G014801--Sobic004G320500 Sobic003G032700 Sobic003G032700 Sobic008G014801--Sobic003G032700 Sobic001G455600 Sobic001G455600 Sobic008G014801--Sobic001G455600 Sobic003G171500 Sobic003G171500 Sobic008G014801--Sobic003G171500 Sobic008G063300 Sobic008G063300 Sobic008G014801--Sobic008G063300 Sobic002G399800 Sobic002G399800 Sobic001G286500--Sobic002G399800 Sobic001G286500--Sobic006G267600 Sobic006G125500 Sobic006G125500 Sobic001G286500--Sobic006G125500 Sobic010G174700 Sobic010G174700 Sobic001G286500--Sobic010G174700 Sobic004G040200 Sobic004G040200 Sobic001G286500--Sobic004G040200 Sobic001G393900 Sobic001G393900 Sobic001G286500--Sobic001G393900 Sobic010G080700 Sobic010G080700 Sobic001G286500--Sobic010G080700 Sobic001G286500--Sobic003G441900 Sobic002G372500 Sobic002G372500 Sobic001G286500--Sobic002G372500 Sobic006G013500 Sobic006G013500 Sobic001G172200--Sobic006G013500 Sobic003G173950 Sobic003G173950 Sobic001G172200--Sobic003G173950 Sobic006G080300 Sobic006G080300 Sobic001G172200--Sobic006G080300 Sobic010G152850 Sobic010G152850 Sobic001G172200--Sobic010G152850 Sobic001G306900 Sobic001G306900 Sobic001G172200--Sobic001G306900 Sobic009G086900 Sobic009G086900 Sobic001G172200--Sobic009G086900 Sobic003G170100 Sobic003G170100 Sobic001G172200--Sobic003G170100 Sobic001G303675 Sobic001G303675 Sobic001G172200--Sobic001G303675 Sobic006G072900 Sobic006G072900 Sobic001G172200--Sobic006G072900 Sobic001G124000 Sobic001G124000 Sobic009G024400--Sobic001G124000 Sobic001G227200 Sobic001G227200 Sobic009G024400--Sobic001G227200 Sobic007G159900 Sobic007G159900 Sobic009G024400--Sobic007G159900 Sobic003G266001 Sobic003G266001 Sobic009G024400--Sobic003G266001 Sobic004G140600 Sobic004G140600 Sobic009G024400--Sobic004G140600 Sobic005G106500 Sobic005G106500 Sobic009G024400--Sobic005G106500 Sobic009G132700 Sobic009G132700 Sobic009G024400--Sobic009G132700 Sobic008G113100 Sobic008G113100 Sobic009G024400--Sobic008G113100 Sobic003G170900 Sobic003G170900 Sobic009G024400--Sobic003G170900 Sobic002G302900--Sobic006G267600 Sobic002G052700 Sobic002G052700 Sobic002G302900--Sobic002G052700 Sobic002G039800 Sobic002G039800 Sobic002G302900--Sobic002G039800 Sobic001G051700 Sobic001G051700 Sobic002G302900--Sobic001G051700 Sobic001G384000 Sobic001G384000 Sobic002G302900--Sobic001G384000 Sobic002G048700 Sobic002G048700 Sobic002G302900--Sobic002G048700 Sobic007G168300 Sobic007G168300 Sobic002G302900--Sobic007G168300 Sobic003G042400 Sobic003G042400 Sobic002G302900--Sobic003G042400 Sobic010G186700 Sobic010G186700 Sobic002G302900--Sobic010G186700 Sobic005G100700 Sobic005G100700 Sobic002G344000--Sobic005G100700 Sobic008G044100 Sobic008G044100 Sobic002G344000--Sobic008G044100 Sobic003G360400 Sobic003G360400 Sobic002G344000--Sobic003G360400 Sobic002G211800 Sobic002G211800 Sobic002G344000--Sobic002G211800 Sobic001G230000 Sobic001G230000 Sobic002G344000--Sobic001G230000 Sobic002G344000--Sobic008G113100 Sobic003G398700 Sobic003G398700 Sobic002G344000--Sobic003G398700 Sobic001G354600 Sobic001G354600 Sobic002G344000--Sobic001G354600 Sobic010G206900 Sobic010G206900 Sobic002G344000--Sobic010G206900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.