Gene annotation
Transcriptome id Sobic.004G072200.1
Synonym Sb04g006040
Functional annotation expressed protein
UniProt C5XX18
Pfam PF10280
Panther DB PTHR22890
NCBI CDD -
KEGG Orthology K15131; mediator of RNA polymerase II transcription subunit 11
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT3G01435 : Expressed protein
RAP-DB (Rice) LOC_Os02g09600.1 : expressed protein
MaizeGDB (Corn) Zm00025a040567 , Zm00025a019367 , Zm00025a034704
Brachypodium KQJ93757 , KQJ93758
Barley HORVU6Hr1G035250.5 , HORVU6Hr1G035250.4 , HORVU6Hr1G035250.1 , HORVU6Hr1G035250.3 , HORVU6Hr1G035250.2
Wheat TraesCS6D02G162100 , TraesCS6A02G173000 , TraesCS6B02G200600
Populus -


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cDNA sequences
Sobic.004G072200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
2 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
3 Sobic.003G297500 glucosidase 2 subunit beta precursor, putative, expressed K08288: protein kinase C substrate 80K-H
4 Sobic.001G542450 - -
5 Sobic.002G154000 EDM2, putative, expressed -
6 Sobic.006G281700 DUF803 domain containing, putative, expressed -
7 Sobic.002G051750 - -
8 Sobic.003G416700 homeobox domain containing protein, expressed -
9 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
10 Sobic.006G080400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11851: ubiquitin carboxyl-terminal hydrolase 30
11 Sobic.001G051700 expressed protein -
12 Sobic.006G154100 mRNA cap guanine-N7 methyltransferase 2, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
13 Sobic.004G049700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.001G014300 OsFBDUF15 - F-box and DUF domain containing protein, expressed -
15 Sobic.004G355800 expressed protein -
16 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
17 Sobic.001G393900 FAD binding domain containing protein, expressed -
18 Sobic.004G155600 dnaJ domain containing protein, expressed -
19 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
20 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3


Gene co-expression network
sample Sobic004G072200 Sobic004G072200 Sobic006G240100 Sobic006G240100 Sobic004G072200--Sobic006G240100 Sobic006G267600 Sobic006G267600 Sobic004G072200--Sobic006G267600 Sobic003G297500 Sobic003G297500 Sobic004G072200--Sobic003G297500 Sobic001G542450 Sobic001G542450 Sobic004G072200--Sobic001G542450 Sobic002G154000 Sobic002G154000 Sobic004G072200--Sobic002G154000 Sobic006G281700 Sobic006G281700 Sobic004G072200--Sobic006G281700 Sobic002G051750 Sobic002G051750 Sobic004G072200--Sobic002G051750 Sobic003G416700 Sobic003G416700 Sobic004G072200--Sobic003G416700 Sobic006G270600 Sobic006G270600 Sobic004G072200--Sobic006G270600 Sobic009G044800 Sobic009G044800 Sobic006G240100--Sobic009G044800 Sobic006G240100--Sobic003G416700 Sobic006G240100--Sobic002G154000 Sobic007G132100 Sobic007G132100 Sobic006G240100--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic006G240100--Sobic007G218000 Sobic003G360400 Sobic003G360400 Sobic006G240100--Sobic003G360400 Sobic010G204400 Sobic010G204400 Sobic006G240100--Sobic010G204400 Sobic001G354600 Sobic001G354600 Sobic006G240100--Sobic001G354600 Sobic004G072100 Sobic004G072100 Sobic006G240100--Sobic004G072100 Sobic006G261400 Sobic006G261400 Sobic006G267600--Sobic006G261400 Sobic001G051700 Sobic001G051700 Sobic006G267600--Sobic001G051700 Sobic001G393900 Sobic001G393900 Sobic006G267600--Sobic001G393900 Sobic006G267600--Sobic002G154000 Sobic007G063000 Sobic007G063000 Sobic006G267600--Sobic007G063000 Sobic002G048700 Sobic002G048700 Sobic006G267600--Sobic002G048700 Sobic009G158100 Sobic009G158100 Sobic006G267600--Sobic009G158100 Sobic004G322400 Sobic004G322400 Sobic006G267600--Sobic004G322400 Sobic006G267600--Sobic003G416700 Sobic009G228000 Sobic009G228000 Sobic003G297500--Sobic009G228000 Sobic009G260650 Sobic009G260650 Sobic003G297500--Sobic009G260650 Sobic003G297500--Sobic006G267600 Sobic001G308400 Sobic001G308400 Sobic003G297500--Sobic001G308400 Sobic003G297500--Sobic003G416700 Sobic003G297500--Sobic006G281700 Sobic009G107300 Sobic009G107300 Sobic003G297500--Sobic009G107300 Sobic003G297500--Sobic002G154000 Sobic003G297500--Sobic004G072200 Sobic008G002300 Sobic008G002300 Sobic001G542450--Sobic008G002300 Sobic001G542450--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G542450--Sobic002G145800 Sobic003G217200 Sobic003G217200 Sobic001G542450--Sobic003G217200 Sobic003G062300 Sobic003G062300 Sobic001G542450--Sobic003G062300 Sobic006G224800 Sobic006G224800 Sobic001G542450--Sobic006G224800 Sobic002G295500 Sobic002G295500 Sobic001G542450--Sobic002G295500 Sobic001G461400 Sobic001G461400 Sobic001G542450--Sobic001G461400 Sobic006G166200 Sobic006G166200 Sobic001G542450--Sobic006G166200 Sobic002G154000--Sobic003G360400 Sobic002G154000--Sobic003G416700 Sobic010G112100 Sobic010G112100 Sobic002G154000--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic002G154000--Sobic001G063700 Sobic010G001100 Sobic010G001100 Sobic002G154000--Sobic010G001100 Sobic002G154000--Sobic001G461400 Sobic001G433800 Sobic001G433800 Sobic002G154000--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic002G154000--Sobic004G048800 Sobic002G154000--Sobic007G063000 Sobic002G063900 Sobic002G063900 Sobic006G281700--Sobic002G063900 Sobic002G260400 Sobic002G260400 Sobic006G281700--Sobic002G260400 Sobic004G246100 Sobic004G246100 Sobic006G281700--Sobic004G246100 Sobic003G160000 Sobic003G160000 Sobic006G281700--Sobic003G160000 Sobic006G281700--Sobic009G260650 Sobic001G042200 Sobic001G042200 Sobic006G281700--Sobic001G042200 Sobic006G281700--Sobic007G218000 Sobic006G281700--Sobic010G204400 Sobic002G056701 Sobic002G056701 Sobic006G281700--Sobic002G056701 Sobic008G088300 Sobic008G088300 Sobic002G051750--Sobic008G088300 Sobic001G014300 Sobic001G014300 Sobic002G051750--Sobic001G014300 Sobic003G312700 Sobic003G312700 Sobic002G051750--Sobic003G312700 Sobic004G355800 Sobic004G355800 Sobic002G051750--Sobic004G355800 Sobic002G051750--Sobic001G461400 Sobic002G051750--Sobic006G240100 Sobic006G067600 Sobic006G067600 Sobic002G051750--Sobic006G067600 Sobic002G357100 Sobic002G357100 Sobic002G051750--Sobic002G357100 Sobic001G087600 Sobic001G087600 Sobic002G051750--Sobic001G087600 Sobic003G416700--Sobic002G154000 Sobic002G264200 Sobic002G264200 Sobic003G416700--Sobic002G264200 Sobic003G416700--Sobic001G461400 Sobic007G183900 Sobic007G183900 Sobic003G416700--Sobic007G183900 Sobic003G416700--Sobic001G051700 Sobic003G416700--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic003G416700--Sobic009G119000 Sobic003G416700--Sobic001G063700 Sobic010G275500 Sobic010G275500 Sobic003G416700--Sobic010G275500 Sobic004G155600 Sobic004G155600 Sobic006G270600--Sobic004G155600 Sobic003G132000 Sobic003G132000 Sobic006G270600--Sobic003G132000 Sobic001G259000 Sobic001G259000 Sobic006G270600--Sobic001G259000 Sobic010G264000 Sobic010G264000 Sobic006G270600--Sobic010G264000 Sobic006G270600--Sobic002G295500 Sobic009G131900 Sobic009G131900 Sobic006G270600--Sobic009G131900 Sobic006G014100 Sobic006G014100 Sobic006G270600--Sobic006G014100 Sobic001G492200 Sobic001G492200 Sobic006G270600--Sobic001G492200 Sobic001G114500 Sobic001G114500 Sobic006G270600--Sobic001G114500
Octagon: transcription factors


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