Gene annotation
Transcriptome id Sobic.001G227700.1,Sobic.001G227700.2
Synonym Sb01g019960
Functional annotation expressed protein
UniProt A0A1B6QKG6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g32690.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G175100 DEK C terminal domain containing protein, expressed -
2 Sobic.004G003700 Trihelix Family(PubMedID : 24864043)@expressed protein -
3 Sobic.009G058100 FHA domain containing protein, putative, expressed -
4 Sobic.001G443600 expressed protein -
5 Sobic.006G232900 expressed protein -
6 Sobic.005G168400 expressed protein -
7 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
8 Sobic.004G237000 down-regulated TF in developmental senescence(PubMedID : 27586543)@"PGL2(Ortholog in rice:Heang and Sassa, 2012b(PubMedID : 31659886)@helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
10 Sobic.001G101700 OsGIF1(Ortholog in rice:He et al. (2017))(PubMedID : 31659832)@GRF-interacting factor 1, putative, expressed -
11 Sobic.006G221800 OsFBX46 - F-box domain containing protein, expressed -
12 Sobic.001G101900 SCP-like extracellular protein, expressed -
13 Sobic.007G152300 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
14 Sobic.010G255000 uncharacterized protein At4g06744 precursor, putative, expressed -
15 Sobic.003G091700 seven in absentia protein family protein, expressed -
16 Sobic.003G319900 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
17 Sobic.001G496400 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
18 Sobic.010G168700 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.001G331700 - -
20 Sobic.003G084100 expressed protein -


Gene co-expression network
sample Sobic001G227700 Sobic001G227700 Sobic001G175100 Sobic001G175100 Sobic001G227700--Sobic001G175100 Sobic004G003700 Sobic004G003700 Sobic001G227700--Sobic004G003700 Sobic009G058100 Sobic009G058100 Sobic001G227700--Sobic009G058100 Sobic001G443600 Sobic001G443600 Sobic001G227700--Sobic001G443600 Sobic006G232900 Sobic006G232900 Sobic001G227700--Sobic006G232900 Sobic005G168400 Sobic005G168400 Sobic001G227700--Sobic005G168400 Sobic007G147200 Sobic007G147200 Sobic001G227700--Sobic007G147200 Sobic004G237000 Sobic004G237000 Sobic001G227700--Sobic004G237000 Sobic001G143400 Sobic001G143400 Sobic001G227700--Sobic001G143400 Sobic008G070700 Sobic008G070700 Sobic001G175100--Sobic008G070700 Sobic001G175100--Sobic004G003700 Sobic004G198100 Sobic004G198100 Sobic001G175100--Sobic004G198100 Sobic006G221800 Sobic006G221800 Sobic001G175100--Sobic006G221800 Sobic001G101700 Sobic001G101700 Sobic001G175100--Sobic001G101700 Sobic008G088800 Sobic008G088800 Sobic001G175100--Sobic008G088800 Sobic001G175100--Sobic007G147200 Sobic001G175100--Sobic001G143400 Sobic008G138000 Sobic008G138000 Sobic001G175100--Sobic008G138000 Sobic004G003700--Sobic001G143400 Sobic007G209200 Sobic007G209200 Sobic004G003700--Sobic007G209200 Sobic010G168700 Sobic010G168700 Sobic004G003700--Sobic010G168700 Sobic004G003700--Sobic007G147200 Sobic004G003700--Sobic006G221800 Sobic009G047500 Sobic009G047500 Sobic004G003700--Sobic009G047500 Sobic004G003700--Sobic001G101700 Sobic004G003700--Sobic005G168400 Sobic004G003700--Sobic008G138000 Sobic004G063600 Sobic004G063600 Sobic009G058100--Sobic004G063600 Sobic009G136000 Sobic009G136000 Sobic009G058100--Sobic009G136000 Sobic001G082800 Sobic001G082800 Sobic009G058100--Sobic001G082800 Sobic009G125800 Sobic009G125800 Sobic009G058100--Sobic009G125800 Sobic008G148000 Sobic008G148000 Sobic009G058100--Sobic008G148000 Sobic009G131200 Sobic009G131200 Sobic009G058100--Sobic009G131200 Sobic002G204400 Sobic002G204400 Sobic009G058100--Sobic002G204400 Sobic001G170800 Sobic001G170800 Sobic009G058100--Sobic001G170800 Sobic009G058100--Sobic004G198100 Sobic001G163732 Sobic001G163732 Sobic001G443600--Sobic001G163732 Sobic006G006200 Sobic006G006200 Sobic001G443600--Sobic006G006200 Sobic004G277501 Sobic004G277501 Sobic001G443600--Sobic004G277501 Sobic004G316100 Sobic004G316100 Sobic001G443600--Sobic004G316100 Sobic003G232800 Sobic003G232800 Sobic001G443600--Sobic003G232800 Sobic003G091700 Sobic003G091700 Sobic001G443600--Sobic003G091700 Sobic001G331700 Sobic001G331700 Sobic001G443600--Sobic001G331700 Sobic001G443600--Sobic001G227700 Sobic003G175300 Sobic003G175300 Sobic001G443600--Sobic003G175300 Sobic006G232900--Sobic006G221800 Sobic006G232900--Sobic005G168400 Sobic006G232900--Sobic001G143400 Sobic006G232900--Sobic004G003700 Sobic006G232900--Sobic001G101700 Sobic010G255000 Sobic010G255000 Sobic006G232900--Sobic010G255000 Sobic006G232900--Sobic004G198100 Sobic010G220800 Sobic010G220800 Sobic006G232900--Sobic010G220800 Sobic006G232900--Sobic007G147200 Sobic005G168400--Sobic010G168700 Sobic005G168400--Sobic001G143400 Sobic005G168400--Sobic004G003700 Sobic003G319900 Sobic003G319900 Sobic005G168400--Sobic003G319900 Sobic001G393200 Sobic001G393200 Sobic005G168400--Sobic001G393200 Sobic005G168400--Sobic009G047500 Sobic005G199700 Sobic005G199700 Sobic005G168400--Sobic005G199700 Sobic001G379900 Sobic001G379900 Sobic005G168400--Sobic001G379900 Sobic007G152300 Sobic007G152300 Sobic005G168400--Sobic007G152300 Sobic010G070900 Sobic010G070900 Sobic007G147200--Sobic010G070900 Sobic007G147200--Sobic010G255000 Sobic007G147200--Sobic004G003700 Sobic003G046400 Sobic003G046400 Sobic007G147200--Sobic003G046400 Sobic006G163300 Sobic006G163300 Sobic007G147200--Sobic006G163300 Sobic007G147200--Sobic001G143400 Sobic003G019900 Sobic003G019900 Sobic007G147200--Sobic003G019900 Sobic006G107500 Sobic006G107500 Sobic007G147200--Sobic006G107500 Sobic007G147200--Sobic001G101700 Sobic003G316601 Sobic003G316601 Sobic004G237000--Sobic003G316601 Sobic003G085900 Sobic003G085900 Sobic004G237000--Sobic003G085900 Sobic007G033700 Sobic007G033700 Sobic004G237000--Sobic007G033700 Sobic004G237000--Sobic003G046400 Sobic004G237000--Sobic010G070900 Sobic002G426000 Sobic002G426000 Sobic004G237000--Sobic002G426000 Sobic004G237000--Sobic007G147200 Sobic009G243000 Sobic009G243000 Sobic004G237000--Sobic009G243000 Sobic001G106500 Sobic001G106500 Sobic004G237000--Sobic001G106500 Sobic001G143400--Sobic004G003700 Sobic001G143400--Sobic010G168700 Sobic001G143400--Sobic005G168400 Sobic001G143400--Sobic007G147200 Sobic001G143400--Sobic010G070900 Sobic001G143400--Sobic009G047500 Sobic001G143400--Sobic005G199700 Sobic001G143400--Sobic008G138000 Sobic001G143400--Sobic007G209200
Octagon: transcription factors


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