Gene annotation
Transcriptome id Sobic.001G252800.1
Synonym SbDof2, DNA binding with One Finger, Sb01g022330, CDF1
Functional annotation Homologous to Dof genes in Arabidopsis and rice. (PubMedID : 21161392)
expressed protein
UniProt R4NHV0 , E6PBP4 , C5WM75
Pfam PF02701
Panther DB PTHR31089 PTHR31089:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G62430 : cycling DOF factor 1
RAP-DB (Rice) LOC_Os03g07360.1 : expressed protein
MaizeGDB (Corn) Zm00025a049197 , Zm00025a037944 , Zm00025a006998 , Zm00025a040930 , Zm00025a028085 , Zm00025a038256 , Zm00025a044220 , Zm00025a016425 , Zm00025a000851 , Zm00025a038795 , Zm00025a017812 , Zm00025a027510 , Zm00025a040004
Brachypodium KQK07701 , KQK23432 , KQK11789 , KQK09823 , PNT70923 , KQJ86253 , KQJ96615
Barley HORVU1Hr1G076800.1 , HORVU5Hr1G113190.2 , HORVU5Hr1G113190.1 , HORVU4Hr1G074990.3 , HORVU4Hr1G074990.2 , HORVU4Hr1G074990.1 , HORVU1Hr1G005390.4 , HORVU1Hr1G005390.1 , HORVU1Hr1G005390.2 , HORVU1Hr1G005390.3 , HORVU3Hr1G072970.1 , HORVU3Hr1G061840.2 , HORVU3Hr1G061840.3 , HORVU5Hr1G113220.1 , HORVU5Hr1G113220.2 , HORVU5Hr1G113220.3 , HORVU5Hr1G113220.4 , HORVU5Hr1G113220.5 , HORVU5Hr1G113220.6 , HORVU3Hr1G116260.2 , HORVU3Hr1G116260.1 , HORVU3Hr1G116220.1 , HORVU3Hr1G116220.2
Wheat TraesCS3D02G537400 , TraesCS1A02G035200 , TraesCS4B02G286400 , TraesCS4D02G285100 , TraesCS5A02G078100 , TraesCS5A02G078100 , TraesCS5D02G493000 , TraesCS4A02G017700 , TraesCS5D02G093800 , TraesCS1B02G045000 , TraesCS1B02G045000 , TraesCS1B02G045000 , TraesCS5B02G492600 , TraesCS5D02G093800 , TraesCS5B02G087600 , TraesCS5B02G087600 , TraesCS5B02G087600 , TraesCS3A02G532000 , TraesCS1D02G036700 , TraesCS1D02G036700 , TraesCS3B02G608800 , TraesCS5A02G479400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G396300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Protein CP12-2 (Os)(PubMedID : 27208977)@calvin cycle protein CP12, putative, expressed -
2 Sobic.003G198100 - -
3 Sobic.008G095000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GRAM domain containing protein, expressed -
4 Sobic.001G186925 - -
5 Sobic.007G218200 NAD dependent epimerase/dehydratase family protein, putative, expressed -
6 Sobic.005G195000 RGH1A, putative, expressed -
7 Sobic.010G236700 protein kinase domain containing protein, expressed K08819: cyclin-dependent kinase 12/13
8 Sobic.006G182800 heat stress transcription factor B-1, putative, expressed K09419: heat shock transcription factor, other eukaryote
9 Sobic.001G435800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-binding EF hand family protein, putative, expressed -
10 Sobic.010G220100 cell cycle control protein, putative, expressed -
11 Sobic.006G208600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein disulfide isomerase, putative, expressed K17609: nucleoredoxin
12 Sobic.007G131900 expressed protein -
13 Sobic.003G263400 Protein kinase domain containing protein, expressed -
14 Sobic.003G104200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.005G002500 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
16 Sobic.004G320300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
17 Sobic.001G386700 Myb transcription factor, putative, expressed -
18 Sobic.010G036000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G406240 - -
20 Sobic.002G417201 - -


Gene co-expression network
sample Sobic001G252800 Sobic001G252800 Sobic001G396300 Sobic001G396300 Sobic001G252800--Sobic001G396300 Sobic003G198100 Sobic003G198100 Sobic001G252800--Sobic003G198100 Sobic008G095000 Sobic008G095000 Sobic001G252800--Sobic008G095000 Sobic001G186925 Sobic001G186925 Sobic001G252800--Sobic001G186925 Sobic007G218200 Sobic007G218200 Sobic001G252800--Sobic007G218200 Sobic005G195000 Sobic005G195000 Sobic001G252800--Sobic005G195000 Sobic010G236700 Sobic010G236700 Sobic001G252800--Sobic010G236700 Sobic006G182800 Sobic006G182800 Sobic001G252800--Sobic006G182800 Sobic001G435800 Sobic001G435800 Sobic001G252800--Sobic001G435800 Sobic004G320300 Sobic004G320300 Sobic001G396300--Sobic004G320300 Sobic001G396300--Sobic001G186925 Sobic006G065700 Sobic006G065700 Sobic001G396300--Sobic006G065700 Sobic001G441800 Sobic001G441800 Sobic001G396300--Sobic001G441800 Sobic002G387100 Sobic002G387100 Sobic001G396300--Sobic002G387100 Sobic002G430200 Sobic002G430200 Sobic001G396300--Sobic002G430200 Sobic001G004000 Sobic001G004000 Sobic001G396300--Sobic001G004000 Sobic001G525000 Sobic001G525000 Sobic001G396300--Sobic001G525000 Sobic009G198400 Sobic009G198400 Sobic001G396300--Sobic009G198400 Sobic006G166300 Sobic006G166300 Sobic003G198100--Sobic006G166300 Sobic003G198100--Sobic010G236700 Sobic003G233100 Sobic003G233100 Sobic003G198100--Sobic003G233100 Sobic001G293600 Sobic001G293600 Sobic003G198100--Sobic001G293600 Sobic002G210100 Sobic002G210100 Sobic003G198100--Sobic002G210100 Sobic003G198100--Sobic001G396300 Sobic006G228400 Sobic006G228400 Sobic003G198100--Sobic006G228400 Sobic003G198100--Sobic001G252800 Sobic010G088950 Sobic010G088950 Sobic003G198100--Sobic010G088950 Sobic002G387400 Sobic002G387400 Sobic008G095000--Sobic002G387400 Sobic008G095000--Sobic001G435800 Sobic010G220100 Sobic010G220100 Sobic008G095000--Sobic010G220100 Sobic010G021401 Sobic010G021401 Sobic008G095000--Sobic010G021401 Sobic009G114900 Sobic009G114900 Sobic008G095000--Sobic009G114900 Sobic008G192800 Sobic008G192800 Sobic008G095000--Sobic008G192800 Sobic009G004500 Sobic009G004500 Sobic008G095000--Sobic009G004500 Sobic003G093500 Sobic003G093500 Sobic008G095000--Sobic003G093500 Sobic009G072400 Sobic009G072400 Sobic008G095000--Sobic009G072400 Sobic009G031300 Sobic009G031300 Sobic001G186925--Sobic009G031300 Sobic002G396900 Sobic002G396900 Sobic001G186925--Sobic002G396900 Sobic004G354800 Sobic004G354800 Sobic001G186925--Sobic004G354800 Sobic002G231800 Sobic002G231800 Sobic001G186925--Sobic002G231800 Sobic010G200800 Sobic010G200800 Sobic001G186925--Sobic010G200800 Sobic001G120100 Sobic001G120100 Sobic001G186925--Sobic001G120100 Sobic005G076100 Sobic005G076100 Sobic001G186925--Sobic005G076100 Sobic003G149900 Sobic003G149900 Sobic001G186925--Sobic003G149900 Sobic001G537900 Sobic001G537900 Sobic001G186925--Sobic001G537900 Sobic007G218200--Sobic001G252800 Sobic007G218200--Sobic003G198100 Sobic007G218200--Sobic006G182800 Sobic003G154800 Sobic003G154800 Sobic007G218200--Sobic003G154800 Sobic001G349800 Sobic001G349800 Sobic007G218200--Sobic001G349800 Sobic007G218200--Sobic001G396300 Sobic008G088803 Sobic008G088803 Sobic007G218200--Sobic008G088803 Sobic010G196200 Sobic010G196200 Sobic007G218200--Sobic010G196200 Sobic004G244500 Sobic004G244500 Sobic007G218200--Sobic004G244500 Sobic006G136900 Sobic006G136900 Sobic005G195000--Sobic006G136900 Sobic002G068500 Sobic002G068500 Sobic005G195000--Sobic002G068500 Sobic004G327500 Sobic004G327500 Sobic005G195000--Sobic004G327500 Sobic004G225450 Sobic004G225450 Sobic005G195000--Sobic004G225450 Sobic008G190700 Sobic008G190700 Sobic005G195000--Sobic008G190700 Sobic009G225300 Sobic009G225300 Sobic005G195000--Sobic009G225300 Sobic010G036000 Sobic010G036000 Sobic005G195000--Sobic010G036000 Sobic003G179100 Sobic003G179100 Sobic005G195000--Sobic003G179100 Sobic009G083100 Sobic009G083100 Sobic005G195000--Sobic009G083100 Sobic010G236700--Sobic003G198100 Sobic010G236700--Sobic006G166300 Sobic010G236700--Sobic001G293600 Sobic010G236700--Sobic010G088950 Sobic010G236700--Sobic006G182800 Sobic001G159850 Sobic001G159850 Sobic010G236700--Sobic001G159850 Sobic006G182800--Sobic001G396300 Sobic004G227400 Sobic004G227400 Sobic006G182800--Sobic004G227400 Sobic003G373150 Sobic003G373150 Sobic006G182800--Sobic003G373150 Sobic004G283300 Sobic004G283300 Sobic006G182800--Sobic004G283300 Sobic004G283201 Sobic004G283201 Sobic006G182800--Sobic004G283201 Sobic006G055600 Sobic006G055600 Sobic006G182800--Sobic006G055600 Sobic010G076500 Sobic010G076500 Sobic006G182800--Sobic010G076500 Sobic006G005600 Sobic006G005600 Sobic006G182800--Sobic006G005600 Sobic004G310600 Sobic004G310600 Sobic006G182800--Sobic004G310600 Sobic001G435800--Sobic010G021401 Sobic001G435800--Sobic009G072400 Sobic001G435800--Sobic009G114900 Sobic005G155001 Sobic005G155001 Sobic001G435800--Sobic005G155001 Sobic002G314950 Sobic002G314950 Sobic001G435800--Sobic002G314950 Sobic008G096900 Sobic008G096900 Sobic001G435800--Sobic008G096900 Sobic008G185000 Sobic008G185000 Sobic001G435800--Sobic008G185000 Sobic010G257300 Sobic010G257300 Sobic001G435800--Sobic010G257300 Sobic001G435800--Sobic010G220100
Octagon: transcription factors


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