Gene annotation
Transcriptome id Sobic.001G261468.1,Sobic.001G261468.2
Synonym -
Functional annotation -
UniProt A0A109NDS7
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G336700 "Involved in secondary cell wall formation. Reduced mechanical strength in culms and leaves, thinner cell walls, reduced cellulose content, increased lignin content, in the mutant. The highest gene expression level in culms. The highest expression levels in vascular bundles and in sub-epidermal regions, where developing sclerenchyma cells are located."(PubMedID : 30590744)@COBRA-like protein precursor, putative, expressed -
2 Sobic.006G124600 Regulator of chromosome condensation domain containing protein, expressed -
3 Sobic.003G220000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC-2 type transporter domain containing protein, expressed -
4 Sobic.001G362100 nodulation protein-related, putative, expressed -
5 Sobic.003G231500 pectinesterase, putative, expressed K01051: pectinesterase
6 Sobic.010G245500 peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.003G180400 "domain confirmed by Pfam database, expressed in leaf, flower and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
8 Sobic.010G024800 OsFBX462 - F-box domain containing protein, expressed -
9 Sobic.002G030725 - -
10 Sobic.001G238600 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.002G384000 expressed protein -
12 Sobic.005G085901 - -
13 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.002G265133 - -
15 Sobic.004G159100 exostosin family domain containing protein, expressed -
16 Sobic.009G048000 villin, putative, expressed K08017: advillin
17 Sobic.003G128100 expressed protein -
18 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
19 Sobic.001G406700 expressed protein -
20 Sobic.005G165100 serpin domain containing protein, putative, expressed K13963: serpin B


Gene co-expression network
sample Sobic001G261468 Sobic001G261468 Sobic001G336700 Sobic001G336700 Sobic001G261468--Sobic001G336700 Sobic006G124600 Sobic006G124600 Sobic001G261468--Sobic006G124600 Sobic003G220000 Sobic003G220000 Sobic001G261468--Sobic003G220000 Sobic001G362100 Sobic001G362100 Sobic001G261468--Sobic001G362100 Sobic003G231500 Sobic003G231500 Sobic001G261468--Sobic003G231500 Sobic010G245500 Sobic010G245500 Sobic001G261468--Sobic010G245500 Sobic003G180400 Sobic003G180400 Sobic001G261468--Sobic003G180400 Sobic010G024800 Sobic010G024800 Sobic001G261468--Sobic010G024800 Sobic002G030725 Sobic002G030725 Sobic001G261468--Sobic002G030725 Sobic002G082300 Sobic002G082300 Sobic001G336700--Sobic002G082300 Sobic010G022400 Sobic010G022400 Sobic001G336700--Sobic010G022400 Sobic009G226900 Sobic009G226900 Sobic001G336700--Sobic009G226900 Sobic002G205500 Sobic002G205500 Sobic001G336700--Sobic002G205500 Sobic006G226200 Sobic006G226200 Sobic001G336700--Sobic006G226200 Sobic003G387500 Sobic003G387500 Sobic001G336700--Sobic003G387500 Sobic009G048000 Sobic009G048000 Sobic001G336700--Sobic009G048000 Sobic005G087200 Sobic005G087200 Sobic001G336700--Sobic005G087200 Sobic003G296400 Sobic003G296400 Sobic001G336700--Sobic003G296400 Sobic004G002600 Sobic004G002600 Sobic006G124600--Sobic004G002600 Sobic006G124600--Sobic003G220000 Sobic006G124600--Sobic003G231500 Sobic003G198048 Sobic003G198048 Sobic006G124600--Sobic003G198048 Sobic005G165100 Sobic005G165100 Sobic006G124600--Sobic005G165100 Sobic003G128100 Sobic003G128100 Sobic006G124600--Sobic003G128100 Sobic006G124600--Sobic001G261468 Sobic006G034200 Sobic006G034200 Sobic006G124600--Sobic006G034200 Sobic001G238600 Sobic001G238600 Sobic006G124600--Sobic001G238600 Sobic003G220000--Sobic001G238600 Sobic006G066500 Sobic006G066500 Sobic003G220000--Sobic006G066500 Sobic003G220000--Sobic003G231500 Sobic001G422300 Sobic001G422300 Sobic003G220000--Sobic001G422300 Sobic008G010400 Sobic008G010400 Sobic003G220000--Sobic008G010400 Sobic003G112200 Sobic003G112200 Sobic003G220000--Sobic003G112200 Sobic003G220000--Sobic006G226200 Sobic003G236701 Sobic003G236701 Sobic003G220000--Sobic003G236701 Sobic007G175400 Sobic007G175400 Sobic003G220000--Sobic007G175400 Sobic001G399200 Sobic001G399200 Sobic001G362100--Sobic001G399200 Sobic001G406700 Sobic001G406700 Sobic001G362100--Sobic001G406700 Sobic010G232500 Sobic010G232500 Sobic001G362100--Sobic010G232500 Sobic001G362100--Sobic003G387500 Sobic001G362100--Sobic009G048000 Sobic001G362100--Sobic003G231500 Sobic006G209300 Sobic006G209300 Sobic001G362100--Sobic006G209300 Sobic006G144600 Sobic006G144600 Sobic001G362100--Sobic006G144600 Sobic001G362100--Sobic006G226200 Sobic003G231500--Sobic001G238600 Sobic003G231500--Sobic003G236701 Sobic003G231500--Sobic006G066500 Sobic003G231500--Sobic001G422300 Sobic003G231500--Sobic006G226200 Sobic003G231500--Sobic003G220000 Sobic003G231500--Sobic006G209300 Sobic003G231500--Sobic007G175400 Sobic008G126000 Sobic008G126000 Sobic003G231500--Sobic008G126000 Sobic010G245500--Sobic010G024800 Sobic010G245500--Sobic003G128100 Sobic004G056300 Sobic004G056300 Sobic010G245500--Sobic004G056300 Sobic002G305400 Sobic002G305400 Sobic010G245500--Sobic002G305400 Sobic002G334400 Sobic002G334400 Sobic010G245500--Sobic002G334400 Sobic009G087900 Sobic009G087900 Sobic010G245500--Sobic009G087900 Sobic001G153800 Sobic001G153800 Sobic010G245500--Sobic001G153800 Sobic001G359100 Sobic001G359100 Sobic010G245500--Sobic001G359100 Sobic003G070200 Sobic003G070200 Sobic010G245500--Sobic003G070200 Sobic003G180400--Sobic010G232500 Sobic003G180400--Sobic001G406700 Sobic009G170500 Sobic009G170500 Sobic003G180400--Sobic009G170500 Sobic003G180400--Sobic006G144600 Sobic003G180400--Sobic001G399200 Sobic001G431100 Sobic001G431100 Sobic003G180400--Sobic001G431100 Sobic002G167600 Sobic002G167600 Sobic003G180400--Sobic002G167600 Sobic003G180400--Sobic003G387500 Sobic005G229100 Sobic005G229100 Sobic003G180400--Sobic005G229100 Sobic003G040400 Sobic003G040400 Sobic010G024800--Sobic003G040400 Sobic001G332050 Sobic001G332050 Sobic010G024800--Sobic001G332050 Sobic005G085901 Sobic005G085901 Sobic002G030725--Sobic005G085901 Sobic002G265133 Sobic002G265133 Sobic002G030725--Sobic002G265133 Sobic002G030725--Sobic001G261468 Sobic009G109850 Sobic009G109850 Sobic002G030725--Sobic009G109850 Sobic004G293900 Sobic004G293900 Sobic002G030725--Sobic004G293900 Sobic002G030725--Sobic007G175400 Sobic002G030725--Sobic003G231500 Sobic002G030725--Sobic001G238600 Sobic003G205700 Sobic003G205700 Sobic002G030725--Sobic003G205700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.